View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7463_high_23 (Length: 240)
Name: NF7463_high_23
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_high_23 |
 | |
|
| [»] chr7 (3 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 1481809 - 1482032
Alignment:
| Q |
17 |
aaattgctcagtatacaaggtttctacgtcgtttgtagtgactcaacatgatgactaaagataatctgttaaaattagttgaatattgtttaagatagtt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481809 |
aaattgctcagtatacaaggtttctacgtagtttgtagtgactcaacatgatgactaaagataatctgttaaaattagttgaatattgtttaagatagtt |
1481908 |
T |
|
| Q |
117 |
acaagttagttacattgtgatctaactaaactaactaatcttattcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttttacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1481909 |
acaagttagttacattgtgatctaactaaactaactaatcgtattcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttttacaa |
1482008 |
T |
|
| Q |
217 |
gttagttacattatgaattaagtt |
240 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
1482009 |
gttagttacattatgaattaagtt |
1482032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 34728641 - 34728685
Alignment:
| Q |
83 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
128 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
34728641 |
tgttagaattagttgaatattgtttaag-tagttacatgttagtta |
34728685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 34893626 - 34893594
Alignment:
| Q |
95 |
ttgaatattgtttaagatagttacaagttagtt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
34893626 |
ttgaatattgtttaagatagttacaagctagtt |
34893594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 49191139 - 49191238
Alignment:
| Q |
17 |
aaattgctcagtatacaaggtttctacgtcgtttgtagtgactcaacatgatgactaaagataatctgttaaaattagttgaatattgtttaagatagtt |
116 |
Q |
| |
|
||||||||| |||| ||||||||||| || |||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
49191139 |
aaattgctccgtatgcaaggtttctatgttgtttgtagtgactcaacatgatcactaaagataatatgctagaattagttgaatattgtttaagatagtt |
49191238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 211
Target Start/End: Original strand, 49191237 - 49191288
Alignment:
| Q |
160 |
ttcacaaatctaaattctatcacaataagacaaacattgtctaaatttgttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
49191237 |
ttcacaaatctaaattctatcacaataagacaaacattctctaagtttgttt |
49191288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 2622028 - 2622073
Alignment:
| Q |
83 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
128 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
2622028 |
tgttagaattagttgaatattgtttaaggtagttacgagttagtta |
2622073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 4573181 - 4573136
Alignment:
| Q |
83 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
128 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||| |||||||||| |
|
|
| T |
4573181 |
tgttgaaattagtttagtattgtttaagatagttataagttagtta |
4573136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 37214237 - 37214282
Alignment:
| Q |
83 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
128 |
Q |
| |
|
||||| ||||||||| |||||||||||| |||||| |||||||||| |
|
|
| T |
37214237 |
tgttagaattagttggatattgtttaaggtagttaaaagttagtta |
37214282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 41356623 - 41356668
Alignment:
| Q |
83 |
tgttaaaattagttgaatattgtttaagatagttacaagttagtta |
128 |
Q |
| |
|
||||| |||| ||||||||||||||||| | ||||||||||||||| |
|
|
| T |
41356623 |
tgttagaattcgttgaatattgtttaagttcgttacaagttagtta |
41356668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University