View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7463_low_12 (Length: 342)
Name: NF7463_low_12
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 37559541 - 37559733
Alignment:
| Q |
5 |
gaattatgtagttttgaagctatgaaggtaacaatgtgaggtaaagttttcacctttttgcaatggtggctgccatttctgaaaacacattaacctcttc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37559541 |
gaattatgtagttttgaagctatgaaggtaacaatgtgaggtaaagttttcacctttttgcaatggtggctgccatttctgaaaacacattaacctcttc |
37559640 |
T |
|
| Q |
105 |
aagatccgacatcaacaacaataacaacaataatggtgtgttacccagaagaaaaggtagtcaaatttcttatatctgtctccttcaccttga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
37559641 |
aagatccgacatcaacaacaataacaacaataatggtgtgttacccaggagaaaaggtagacaaatttcttatacttgtctccttcaccttga |
37559733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 37559790 - 37559855
Alignment:
| Q |
263 |
aagaagatttgcttcaccacttttgtcacgttcaacaaattcaccatcttcaacaccaattgatgt |
328 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
37559790 |
aagaagatttgcttcaccaattttgtcacgttcaacaaattaaccatcttcaacaccaattgatgt |
37559855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 41387005 - 41386813
Alignment:
| Q |
5 |
gaattatgtagttttgaagctatgaaggtaacaatgtgaggtaaagttttcacctttttgcaatggtggctgccatttctgaaaacacattaacctcttc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41387005 |
gaattatgtagttttgaagctatgaaggtaacaatgtgaggtaaagttttcacctttttgcaatggtggctgccatttctgaaaacacattaacctcttc |
41386906 |
T |
|
| Q |
105 |
aagatccgacatcaacaacaataacaacaataatggtgtgttacccagaagaaaaggtagtcaaatttcttatatctgtctccttcaccttga |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
41386905 |
aagatccgacatcaacaacaataacaacaataatggtgtgttacccaggagaaaaggtagacaaatttcttatacttgtctccttcaccttga |
41386813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 263 - 328
Target Start/End: Complemental strand, 41386756 - 41386691
Alignment:
| Q |
263 |
aagaagatttgcttcaccacttttgtcacgttcaacaaattcaccatcttcaacaccaattgatgt |
328 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41386756 |
aagaagatttgcttcaccaattttgtcacgttcaacaaattcaccatcttcaataccaattgatgt |
41386691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 48287952 - 48287786
Alignment:
| Q |
15 |
gttttgaagctatgaaggtaacaatgtgaggtaaagttttcacctttttgcaatggtggctgccatttctgaaaacacattaacctcttcaagatccgac |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
48287952 |
gttttgtagctatgaaggtaacaatgtgaggtaaagttttcacctttttgcaatggtggctgccatttctgaaaacccattaacctcttcaaggtccgac |
48287853 |
T |
|
| Q |
115 |
atcaaca------acaataacaacaataatggtgtgttacccagaagaaaaggtagtcaaatttctt |
175 |
Q |
| |
|
||||||| |||||||||| || |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
48287852 |
atcaacaacaacaacaataacaataacaatggtgtcttacccagaagaaaaggtagacaaatttctt |
48287786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 48287667 - 48287610
Alignment:
| Q |
263 |
aagaagatttgcttcaccacttttgtcacgttcaacaaattcaccatcttcaacacca |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
48287667 |
aagaagatttgcttcaccacttttgtcacgttcaacgaattcatcatcttcaacacca |
48287610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University