View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_15 (Length: 291)
Name: NF7463_low_15
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 5 - 276
Target Start/End: Complemental strand, 31650751 - 31650480
Alignment:
| Q |
5 |
gctagattattctacataagaattaattatcttccaatgccaaatcgaaaataaacttgcctatcaatatatatccacatgcctattctcttggtgtagt |
104 |
Q |
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| T |
31650751 |
gctagattattttacataagaattaattatcctccaatgccaaatcgaaaataaacttgcctatcaatatatatccacatgcctattctcttggtgtagt |
31650652 |
T |
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| Q |
105 |
gtgtttctcttaatgtcttagatttgaatcctcccagtggcaatttaccagattaatcactcattagacggataacgagttttatgaagataaataaaat |
204 |
Q |
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| T |
31650651 |
gtgcttctcttaatgtcttagatttgaatcctcccggtggcaatttaccaaattaatcactcattagacggataacgagttttatgaagaaaaataaaat |
31650552 |
T |
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| Q |
205 |
tttcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaat |
276 |
Q |
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| T |
31650551 |
tctcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaat |
31650480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 31657563 - 31657494
Alignment:
| Q |
207 |
tcaaattaaaaagattcactcgatgatgactcactgacatgtctcaaataatcaaaataaacatcaaaat |
276 |
Q |
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| T |
31657563 |
tcaaattaaaaagattcgatcgatgataactcactaacatctcttaaataatcgaaatacacatcaaaat |
31657494 |
T |
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