View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7463_low_16 (Length: 282)

Name: NF7463_low_16
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7463_low_16
NF7463_low_16
[»] chr1 (6 HSPs)
chr1 (21-280)||(18472643-18472902)
chr1 (21-269)||(25921693-25921939)
chr1 (164-268)||(43407207-43407307)
chr1 (21-117)||(16075097-16075193)
chr1 (21-55)||(33007406-33007440)
chr1 (21-55)||(43407122-43407156)
[»] chr7 (7 HSPs)
chr7 (21-280)||(48653552-48653811)
chr7 (66-244)||(7589136-7589312)
chr7 (204-280)||(48576948-48577021)
chr7 (164-268)||(10288631-10288731)
chr7 (21-55)||(10288546-10288580)
chr7 (21-55)||(40106227-40106261)
chr7 (21-55)||(49170058-49170092)
[»] chr5 (4 HSPs)
chr5 (21-280)||(42861607-42861866)
chr5 (87-263)||(25101745-25101915)
chr5 (87-263)||(25160838-25161008)
chr5 (21-54)||(6309186-6309219)
[»] chr6 (4 HSPs)
chr6 (21-280)||(13773138-13773397)
chr6 (103-216)||(20555538-20555644)
chr6 (21-55)||(10751315-10751349)
chr6 (21-55)||(23260369-23260403)
[»] chr2 (6 HSPs)
chr2 (21-260)||(35670507-35670746)
chr2 (21-280)||(12774147-12774412)
chr2 (104-280)||(28266950-28267127)
chr2 (107-274)||(41340068-41340233)
chr2 (21-55)||(18292449-18292483)
chr2 (21-55)||(40729182-40729216)
[»] chr8 (6 HSPs)
chr8 (87-192)||(3189255-3189363)
chr8 (89-197)||(22635850-22635958)
chr8 (18-54)||(22816028-22816064)
chr8 (21-55)||(22635738-22635772)
chr8 (21-55)||(41958177-41958211)
chr8 (21-118)||(44436477-44436573)
[»] chr4 (6 HSPs)
chr4 (21-257)||(13652750-13652986)
chr4 (21-257)||(13660875-13661111)
chr4 (21-85)||(2761815-2761879)
chr4 (175-262)||(42900030-42900117)
chr4 (21-55)||(55162571-55162605)
chr4 (21-54)||(69782-69815)
[»] chr3 (3 HSPs)
chr3 (164-268)||(7336534-7336634)
chr3 (21-55)||(5004475-5004509)
chr3 (21-55)||(7336449-7336483)


Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 18472643 - 18472902
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18472643 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttagacaccacagagaattataagtttaacccgccactaaggcacac 18472742  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18472743 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 18472842  T
Q  221 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18472843 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacatt 18472902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 25921939 - 25921693
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    ||||||||||||||  ||| ||||||||||||||| |     ||||||  ||||||  ||||||| ||||||||||||||||||| ||||||||||||||    
T  25921939 cacagatgcatatgtcatgtatgatcatgaaaatgtaaacaaaatcccgtcacttaggcaccacaaagaattataagtttaacccaccactaaggcacac 25921840  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaaga 219  Q
     |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||||| |||| |||     |||||||||||||    
T  25921839 caaaaatgcatatgtcatgataataaaaatagaggcaatccccgccacttaggcaatcacacagaaagtaataccacatcatgc---acatgacaaaaga 25921743  T
Q  220 aatctttcataaaaggcttatttctcttcttattatttcagttcgataac 269  Q
    ||||| ||||||||| ||||||  |||||||||||||||||||| |||||    
T  25921742 aatctctcataaaagtcttattgttcttcttattatttcagttccataac 25921693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 43407207 - 43407307
Alignment:
Q  164 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 263  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  43407207 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 43407302  T
Q  264 gataa 268  Q
    |||||    
T  43407303 gataa 43407307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 16075193 - 16075097
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggca 117  Q
    ||||||||||| ||| ||||||||||||||||||| ||| | |||||| ||||| |  ||||||| || | ||| |  ||||||||||| |||||||    
T  16075193 cacagatgcatttgccatgcatgatcatgaaaatgcatcctaaatcccgccactcaggcaccacaaagtaatatgatattaacccgccattaaggca 16075097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 33007406 - 33007440
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||||||||||||| |||||||||    
T  33007406 cacagatgcatatgctatgcatgattatgaaaatg 33007440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 43407122 - 43407156
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  43407122 cacagatgcatatgccatgcatgatcatgaaaatg 43407156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 48653552 - 48653811
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  48653552 cacagatgcatatgttatgcatgatcatgaaaatggatcatgaatcccgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacac 48653651  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 220  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  48653652 caaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccacacagaaagtaataacacaacatcttatacatgataaaagaa 48653751  T
Q  221 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  48653752 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcacatt 48653811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 7589136 - 7589312
Alignment:
Q  66 cccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgcc 165  Q
    |||||||||||| ||||||| | |||||||| ||||||||| |||| ||| |||| ||||||||  ||||||||||||||||||||||||||  ||||||    
T  7589136 cccaccacttaagcaccacaaaaaattataaatttaacccgtcactgagggacactaaaaatgc--atgtcatgataataaaaatagatgcatccccgcc 7589233  T
Q  166 acttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttct 244  Q
    ||  ||   |||| |||| || ||||||||||  ||  |  |||||||||||||  |||| |||||||| |||||||||    
T  7589234 accaagaggaccacacaggaaataataacacattataatgcacatgacaaaagaggtcttccataaaagtcttatttct 7589312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 204 - 280
Target Start/End: Complemental strand, 48577021 - 48576948
Alignment:
Q  204 tatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
    |||||||||||||||||||||||||||||||||| |||||   ||||||||||| |||||||||||||||| |||||    
T  48577021 tatacatgacaaaagaaatctttcataaaaggctcatttc---tcttattattttagttcgataacgatctcacatt 48576948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 10288631 - 10288731
Alignment:
Q  164 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 263  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  10288631 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 10288726  T
Q  264 gataa 268  Q
    |||||    
T  10288727 gataa 10288731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 10288546 - 10288580
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  10288546 cacagatgcatatgccatgcatgatcatgaaaatg 10288580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 40106261 - 40106227
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  40106261 cacagatgcatatgccatgcatgatcatgaaaatg 40106227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 49170058 - 49170092
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  49170058 cacagatgcatatgccatgcatgatcatgaaaatg 49170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 280
Target Start/End: Complemental strand, 42861866 - 42861607
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||||||    
T  42861866 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacac 42861767  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 220  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||    
T  42861766 caaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttagacaaccacactgaaagtaataacacaacatcttatacatgacaaaagaa 42861667  T
Q  221 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  42861666 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcacatt 42861607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 263
Target Start/End: Original strand, 25101745 - 25101915
Alignment:
Q  87 agaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaa 185  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  25101745 agaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaa-tagatgcaatccccgccacttaagcaaccacacagaa 25101843  T
Q  186 agtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 263  Q
    | ||||| |||| |||     |||||||||| |||| || ||||||||| ||||||    ||||||||||||||||||    
T  25101844 aataataccacatcatgc---acatgacaaatgaaaactctcataaaagtcttattg---ttcttattatttcagttc 25101915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 263
Target Start/End: Original strand, 25160838 - 25161008
Alignment:
Q  87 agaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaa 185  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  25160838 agaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaa-tagatgcaatccccgccacttaagcaaccacacagaa 25160936  T
Q  186 agtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 263  Q
    | ||||| |||| |||     |||||||||| |||| || ||||||||| ||||||    ||||||||||||||||||    
T  25160937 aataataccacatcatgc---acatgacaaatgaaaactctcataaaagtcttattg---ttcttattatttcagttc 25161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 6309219 - 6309186
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaat 54  Q
    ||||||||||||||| ||||||||||||||||||    
T  6309219 cacagatgcatatgccatgcatgatcatgaaaat 6309186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 13773138 - 13773397
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| | |||||||  ||||||| ||||||||||||||||||||||||||||||||||    
T  13773138 cacagatgtatatgctatgcatgatcatgaaaatggatcatggatctcgccacttaggcaccacaaagaattataagtttaacccgccactaaggcacac 13773237  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 220  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  13773238 caaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccacacagaaagtaataactcaacatcctatacatgacaaaagaa 13773337  T
Q  221 atctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13773338 atctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgacatt 13773397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 216
Target Start/End: Complemental strand, 20555644 - 20555538
Alignment:
Q  103 cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatc 202  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||| || |||||| ||||||      ||||||||||||||||||||    
T  20555644 cccgccactaaagcacaccaaaaatgtttatgtcatgataataaaaatagatggaat-ccaccacttgggcaac------gaaagtaataacacaacatc 20555552  T
Q  203 ttatacatgacaaa 216  Q
     | |||||||||||    
T  20555551 atgtacatgacaaa 20555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 10751315 - 10751349
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  10751315 cacagatgcatatgccatgcatgatcatgaaaatg 10751349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 23260369 - 23260403
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  23260369 cacagatgcatatgccatgcatgatcatgaaaatg 23260403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 35670507 - 35670746
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||| ||||||||||||||||||||||||||||||||||    
T  35670507 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccgccacataggcaccacaaagaattataagtttaacccgccactaaggcacac 35670606  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaa 220  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  35670607 caaaaattcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccacacagaaagtaataacacgacatcttatacatgacaaaagaa 35670706  T
Q  221 atctttcataaaaggcttatttctcttcttattatttcag 260  Q
    ||||||||||||||||| |||| ||| |||||||||||||    
T  35670707 atctttcataaaaggctcatttatctgcttattatttcag 35670746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 21 - 280
Target Start/End: Original strand, 12774147 - 12774412
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcacac 120  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||  ||||||| |||  ||| |  ||| ||||||||||||||||||    
T  12774147 cacagatgcatatgcgatgcatgatcatgaaaatgaatcatgaatcccgccacttaggcaccacaaagagatatgatattatcccgccactaaggcacac 12774246  T
Q  121 aaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaaga 219  Q
     | |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||    
T  12774247 cacaaatgcttatgtcatgataataaaaacagatgcaatccccgccacttaggcaaccacacagaaagtaataatacaacatcatgtacatgacaaaaga 12774346  T
Q  220 aatctttcataaaaggc-----ttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
    |||||||||||||||||     | ||||||||| ||||||||| |||||||||||||||| |||||    
T  12774347 aatctttcataaaaggctcatttaatttctcttattattattttagttcgataacgatctcacatt 12774412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 104 - 280
Target Start/End: Original strand, 28266950 - 28267127
Alignment:
Q  104 ccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatc-ccgccacttaggcaaccagacagaaagtaataacacaacatc 202  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28266950 ccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatctccgccacttaggcaaccacacagaaagtaataacacaacatc 28267049  T
Q  203 ttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatt 280  Q
     | ||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| |||||    
T  28267050 atgtacatgacaaaagaaatctttcataaagggctcatttcccttcttattattttagttcgataacgatctcacatt 28267127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 107 - 274
Target Start/End: Original strand, 41340068 - 41340233
Alignment:
Q  107 ccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgcca-cttaggcaaccagacagaaagtaataacacaacatctta 205  Q
    |||||||||||||| ||||||||  || | |||| |||||||||| ||||||||||  || ||||| |||||| ||||||| ||||| |||| |||        
T  41340068 ccactaaggcacaccaaaaatgcacatattatgagaataaaaatatatgcaatccccacaacttagacaaccacacagaaaataataccacatcatgc-- 41340165  T
Q  206 tacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatct 274  Q
     ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  41340166 -acacgacaaaaaaaatctttcataaaaagcttatttctcttattattatttctgttcgataacaatct 41340233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 18292449 - 18292483
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  18292449 cacagatgcatatgccatgcatgatcatgaaaatg 18292483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 40729182 - 40729216
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  40729182 cacagatgcatatgccatgcatgatcatgaaaatg 40729216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 3189255 - 3189363
Alignment:
Q  87 agaattataagtttaa---cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagaca 182  Q
    ||||||||||||||||   |||||||||||||||||| |||||||| |||||||||| |||  ||||||||||||| ||||||||||||||||||| |||    
T  3189255 agaattataagtttaattacccgccactaaggcacaccaaaaatgcatatgtcatgagaat-caaatagatgcaatccccgccacttaggcaaccacaca 3189353  T
Q  183 gaaagtaata 192  Q
    ||||||||||    
T  3189354 gaaagtaata 3189363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 197
Target Start/End: Original strand, 22635850 - 22635958
Alignment:
Q  89 aattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaag 187  Q
    ||||||||||||||||||||| ||| |||| | |||||||| |||||||||| |||  ||||||||||||| ||||||||||||||||||| ||||||||    
T  22635850 aattataagtttaacccgccattaaagcactccaaaaatgcatatgtcatgagaat-caaatagatgcaatccccgccacttaggcaaccacacagaaag 22635948  T
Q  188 taataacaca 197  Q
    ||||| ||||    
T  22635949 taataccaca 22635958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 22816028 - 22816064
Alignment:
Q  18 ccgcacagatgcatatgctatgcatgatcatgaaaat 54  Q
    |||||||||||||||||| ||||||||||||||||||    
T  22816028 ccgcacagatgcatatgccatgcatgatcatgaaaat 22816064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 22635738 - 22635772
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  22635738 cacagatgcatatgccatgcatgatcatgaaaatg 22635772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 41958177 - 41958211
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  41958177 cacagatgcatatgccatgcatgatcatgaaaatg 41958211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 44436573 - 44436477
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcac 118  Q
    ||||||||||||||| | |||||||||||||||| ||   | || ||||||||| |  ||||||| |||| ||||| | |||||||| ||||||||||    
T  44436573 cacagatgcatatgccaagcatgatcatgaaaatagagactaaaacccaccactaaggcaccacacagaa-tataattataacccgcaactaaggcac 44436477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 13652986 - 13652750
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatca-tgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcaca 119  Q
    |||| |||||||| | ||||||||||||||||||| |  | | || ||| |||||||   |||||| ||||| |||||||||||||||||| ||||||||    
T  13652986 cacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcaca 13652887  T
Q  120 caaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaag 218  Q
    |   |||| | ||||||| |||||||||  |||||||||| ||||||||| |||||| || ||| ||| ||||| ||||  ||| |  ||||||||||||    
T  13652886 c--caaatacatatgtcacgataataaaggtagatgcaatccccgccactaaggcaatcacacaaaaaataatagcacattatcatgcacatgacaaaag 13652789  T
Q  219 aaatctttcataaaaggctta-tttctcttcttattattt 257  Q
    |  |||| ||| |||| |||| ||||||||||||||||||    
T  13652788 aggtcttccat-aaagtcttattttctcttcttattattt 13652750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 13661111 - 13660875
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatca-tgaatcccaccacttaaacaccacagagaattataagtttaacccgccactaaggcaca 119  Q
    |||| |||||||| | ||||||||||||||||||| |  | | || ||| |||||||   |||||| ||||| |||||||||||||||||| ||||||||    
T  13661111 cacaaatgcatataccatgcatgatcatgaaaatgcaagactaaaacccgccacttaggtaccacaaagaataataagtttaacccgccacaaaggcaca 13661012  T
Q  120 caaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaag 218  Q
    |   |||| | ||||||| |||||||||  |||||||||| ||||||||| |||||| || ||| ||| ||||| ||||  ||| |  ||||||||||||    
T  13661011 c--caaatacatatgtcacgataataaaggtagatgcaatccccgccactaaggcaatcacacaaaaaataatagcacattatcatgcacatgacaaaag 13660914  T
Q  219 aaatctttcataaaaggctta-tttctcttcttattattt 257  Q
    |  |||| ||| |||| |||| ||||||||||||||||||    
T  13660913 aggtcttccat-aaagtcttattttctcttcttattattt 13660875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 2761815 - 2761879
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatggatcatgaatcccaccacttaaacaccaca 85  Q
    |||| |||||||||| ||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  2761815 cacaaatgcatatgccatgcatgatcatgaaaatgaatcctaaatcccaccacttaagcaccaca 2761879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 42900030 - 42900117
Alignment:
Q  175 accagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagtt 262  Q
    |||| ||||||||||||||||||  | | |  || ||||||| || || || |||||||| |||||||||||||||||||||| ||||    
T  42900030 accacacagaaagtaataacacattaacctgcacctgacaaatgagattttccataaaagtcttatttctcttcttattattttagtt 42900117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 55162605 - 55162571
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  55162605 cacagatgcatatgccatgcatgatcatgaaaatg 55162571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 69815 - 69782
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaat 54  Q
    ||||||||||||||| ||||||||||||||||||    
T  69815 cacagatgcatatgccatgcatgatcatgaaaat 69782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 268
Target Start/End: Original strand, 7336534 - 7336634
Alignment:
Q  164 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 263  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  7336534 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 7336629  T
Q  264 gataa 268  Q
    |||||    
T  7336630 gataa 7336634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 5004475 - 5004509
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  5004475 cacagatgcatatgccatgcatgatcatgaaaatg 5004509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 7336449 - 7336483
Alignment:
Q  21 cacagatgcatatgctatgcatgatcatgaaaatg 55  Q
    ||||||||||||||| |||||||||||||||||||    
T  7336449 cacagatgcatatgccatgcatgatcatgaaaatg 7336483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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