View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7463_low_18 (Length: 275)

Name: NF7463_low_18
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7463_low_18
NF7463_low_18
[»] chr6 (3 HSPs)
chr6 (123-260)||(29431844-29431981)
chr6 (1-54)||(29431724-29431777)
chr6 (123-197)||(16509323-16509397)
[»] chr1 (1 HSPs)
chr1 (136-204)||(25454791-25454855)
[»] chr8 (2 HSPs)
chr8 (123-193)||(22591535-22591605)
chr8 (166-203)||(20472728-20472765)
[»] chr4 (4 HSPs)
chr4 (135-204)||(25295113-25295182)
chr4 (172-205)||(41227517-41227550)
chr4 (123-183)||(4437552-4437612)
chr4 (169-205)||(56135905-56135941)
[»] chr3 (2 HSPs)
chr3 (13-46)||(34323723-34323756)
chr3 (134-190)||(34323587-34323643)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 29431844 - 29431981
Alignment:
Q  123 atacttcaagaacacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaagcccttccctcctctatgaaatgaggggaa 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29431844 atacttcaagaacacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaagcccttccctcctctatgaaatgagggtaa 29431943  T
Q  223 ggatggagtttgtttgaagttttagtagtttgtttgat 260  Q
    |||||||| |||||||||||||||||||||||||||||    
T  29431944 ggatggagattgtttgaagttttagtagtttgtttgat 29431981  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29431724 - 29431777
Alignment:
Q  1 tctcggtcatgtttgggagttgagttttggaggggagggctttggacggaaggt 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29431724 tctcggtcatgtttgggagttgagttttggaggggagggctttggacggaaggt 29431777  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 197
Target Start/End: Complemental strand, 16509397 - 16509323
Alignment:
Q  123 atacttcaagaacacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaagccct 197  Q
    |||||||||  |||||| ||| |||||| |||| ||||||  |||||||||||| |||||||| |||||||||||    
T  16509397 atacttcaatcacacttgatttatttttaaaaacattttatagtgtctttaattcaaaaaagaaaagtaagccct 16509323  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 25454855 - 25454791
Alignment:
Q  136 acttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaagcccttccctcc 204  Q
    ||||||||||||||| |||| ||||    ||||||| ||||||||||||| ||||||||||| ||||||    
T  25454855 acttaattcatttttaaaaacattt----gtgtcttcaatttaaaaaagaaaagtaagccctcccctcc 25454791  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 22591535 - 22591605
Alignment:
Q  123 atacttcaagaacacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaag 193  Q
    ||||||||| | ||||| |||| ||||| |||||||||||  ||||| |||||||||| |||| |||||||    
T  22591535 atacttcaatagcacttcattcttttttaaaaatattttatagtgtccttaatttaaacaagaaaagtaag 22591605  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 203
Target Start/End: Complemental strand, 20472765 - 20472728
Alignment:
Q  166 tgtctttaatttaaaaaagagaagtaagcccttccctc 203  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  20472765 tgtctgtaatttaaaaaagaaaagtaagcccttccctc 20472728  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 25295182 - 25295113
Alignment:
Q  135 cacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagtaagcccttccctcc 204  Q
    |||| ||||||||||| || ||||||||  ||||| | ||||| ||||||| |||||||| |||||||||    
T  25295182 cactaaattcatttttaaagatattttatagtgtcctgaattttaaaaagaaaagtaagcgcttccctcc 25295113  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 205
Target Start/End: Complemental strand, 41227550 - 41227517
Alignment:
Q  172 taatttaaaaaagagaagtaagcccttccctcct 205  Q
    |||||||||||||||||||||||||| |||||||    
T  41227550 taatttaaaaaagagaagtaagccctgccctcct 41227517  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 4437552 - 4437612
Alignment:
Q  123 atacttcaagaacacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaa 183  Q
    ||||||||| ||||||| ||| |||||| |||| |||||||  ||| ||||||||||||||    
T  4437552 atacttcaaaaacacttgatttatttttaaaaacattttacattgtttttaatttaaaaaa 4437612  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 56135905 - 56135941
Alignment:
Q  169 ctttaatttaaaaaagagaagtaagcccttccctcct 205  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  56135905 ctttaatttaaaaaagaaaagtaagccctcccctcct 56135941  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 34323756 - 34323723
Alignment:
Q  13 ttgggagttgagttttggaggggagggctttgga 46  Q
    ||||||||||||||||||| ||||||||||||||    
T  34323756 ttgggagttgagttttggatgggagggctttgga 34323723  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 34323643 - 34323587
Alignment:
Q  134 acacttaattcatttttgaaaatattttacggtgtctttaatttaaaaaagagaagt 190  Q
    ||||| |||| ||||||||||| ||||||| ||||| ||||||||| ||||| ||||    
T  34323643 acactcaatttatttttgaaaacattttacagtgtccttaatttaataaagaaaagt 34323587  T

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