View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7463_low_2 (Length: 673)
Name: NF7463_low_2
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 553
Target Start/End: Complemental strand, 44632949 - 44632414
Alignment:
| Q |
18 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632949 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
44632850 |
T |
|
| Q |
118 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44632849 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgagaatccaatcacactgtctctcaaaccat |
44632750 |
T |
|
| Q |
218 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632749 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
44632650 |
T |
|
| Q |
318 |
cgctttctccttagctgctaacctcattcttgcagctgatgaaagacagaaaccagtataagaaaatatggcaatccaagaacaaagtagatgtttggca |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44632649 |
cgctttctccttagctgctaacctcattcttgcagctgatgaaagacagaaaccagtataagaaaatatggcaatccaagaacaaagtagatatttggca |
44632550 |
T |
|
| Q |
418 |
catagcactaggcagagaaacatcttaaatgatataagaacctgaatattacatgtatccctacatagttgtccatacatgtatgatgtatcaagaggaa |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
44632549 |
catagcactaggcagagaaacatcttaaatgatataagaacctgaatattacatgtatccctacatagttgtccatatatgtatgatgtatcaagaggaa |
44632450 |
T |
|
| Q |
518 |
acaggtaggttttaaacacttattgacctcttttgg |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44632449 |
acaggtaggttttaaacacttattgacctcttttgg |
44632414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 44683614 - 44683239
Alignment:
| Q |
18 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
117 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44683614 |
aagtccatcacgaatttgactagctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagacttggaggcagccccaatttctttcata |
44683515 |
T |
|
| Q |
118 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44683514 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccat |
44683415 |
T |
|
| Q |
218 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
317 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
44683414 |
ccacaatggcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttc |
44683315 |
T |
|
| Q |
318 |
cgctttctccttagctgctaacctcattcttgcagctgatga-aagacagaaaccagtataagaaaatatggcaat |
392 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
|
|
| T |
44683314 |
agccttctctttagctgccaacctcattcttgcagctgatcacaagacagaaaacagtataagaaaatatggcaat |
44683239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 44654815 - 44654440
Alignment:
| Q |
18 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
117 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
44654815 |
aagtccatcacgaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcata |
44654716 |
T |
|
| Q |
118 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44654715 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccat |
44654616 |
T |
|
| Q |
218 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
317 |
Q |
| |
|
||||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
44654615 |
ccacaatcgcttgacgctggcgagcaatacccaacccagagagatatttagactcagcctcaccctcggctcgcttaatttgcaagattttctctgcttc |
44654516 |
T |
|
| Q |
318 |
cgctttctccttagctgctaacctcattcttgcagctgatga-aagacagaaaccagtataagaaaatatggcaat |
392 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |
|
|
| T |
44654515 |
agccttctctttagctgccaacctcattcttgcagctgatcacaagacagaaaacagtataagaaaatatggcaat |
44654440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 429
Target Start/End: Complemental strand, 44693346 - 44692935
Alignment:
| Q |
18 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
117 |
Q |
| |
|
||||||||| | |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
44693346 |
aagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcata |
44693247 |
T |
|
| Q |
118 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
44693246 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttggccctggtacattctctgaaaatccaatcacactgtctctcaaaccat |
44693147 |
T |
|
| Q |
218 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
317 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
44693146 |
ctacaatggcttgacgttgacgagcaatacccatcccagagagatatttagactcagcctcaccctcggctcgctttatttgcaagattttctctgcttc |
44693047 |
T |
|
| Q |
318 |
cgctttctccttagctgctaacctcattcttgcagctgatgaaagacagaaaccagtataagaaaatatggcaatccaagaacaaagtagatgtttggca |
417 |
Q |
| |
|
|| ||||| |||||||| | |||||||||||||||| || | |||||| || | ||| | |||||||||| ||||||||| ||||| |||| ||||||| |
|
|
| T |
44693046 |
agccttctcattagctgcgatcctcattcttgcagctaatcatagacaggaaacggtaaatgaaaatatggtaatccaagagcaaaggagatatttggca |
44692947 |
T |
|
| Q |
418 |
catagcactagg |
429 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44692946 |
catagcactagg |
44692935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 440
Target Start/End: Original strand, 44635893 - 44636315
Alignment:
| Q |
18 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
117 |
Q |
| |
|
|||||| || ||||||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
44635893 |
aagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagcagaagatttggaggcagcaccaatttctttcata |
44635992 |
T |
|
| Q |
118 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44635993 |
gtgtcaaagtattgagtgacaaggaccaaatccatgacatctttagcacttgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccat |
44636092 |
T |
|
| Q |
218 |
ccacaatggcttgacgttggcgagcaatacccatcccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctc |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
44636093 |
ccacaatggcttgacgttgacgagcaatacccaccccatggagatatttagattcagcctcaccctcggctcgctttacttgcaagatcttctctgcctc |
44636192 |
T |
|
| Q |
318 |
cgctttctccttagctgctaacctcattcttgcagctgatgaaagacagaaaccagtataagaaaatatggcaatccaagaacaaagtagatgtttggca |
417 |
Q |
| |
|
|| || || |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||| |
|
|
| T |
44636193 |
tgccttttctttagctgccactctcattcttgcagctgatcgaagacagaaaccagtataagaaaatatggcaatccaagaacaaaatagatattaggca |
44636292 |
T |
|
| Q |
418 |
catagcactaggcagagaaacat |
440 |
Q |
| |
|
| |||||| || |||||||||| |
|
|
| T |
44636293 |
taaagcactcggtagagaaacat |
44636315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 44625660 - 44625430
Alignment:
| Q |
18 |
aagtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaa |
117 |
Q |
| |
|
||||||||| | |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
44625660 |
aagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagacttggaggcagcaccaatttctttcata |
44625561 |
T |
|
| Q |
118 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44625560 |
gtgtcaaagtattgagtgacaaggaccatatccatgacatcttttgcagtcgtccctggtacattaactgaaaatccaatcacactgtctctcaaaccat |
44625461 |
T |
|
| Q |
218 |
ccacaatggcttgacgttggcgagcaatacc |
248 |
Q |
| |
|
||||||| |||||||| |||||||||||||| |
|
|
| T |
44625460 |
ccacaatcgcttgacgctggcgagcaatacc |
44625430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 52 - 355
Target Start/End: Complemental strand, 3205311 - 3205008
Alignment:
| Q |
52 |
acagcgccaggtccatgtggaatgaacacagcagaagacttggaggcagccccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatcca |
151 |
Q |
| |
|
||||| ||||| ||||||||||||||||||| || || || |||| || |||||||| |||| ||||| ||||||||||| || | ||||| |||| |
|
|
| T |
3205311 |
acagcaccaggaccatgtggaatgaacacagatgacgattttgaggatgcaccaatttccttcatggtgtcgaagtattgagtcaccaacaccatgtcca |
3205212 |
T |
|
| Q |
152 |
tgacatcttttgcacttgtccctggtacattaaccgaaaatccaatcacactgtctctcaaaccatccacaatggcttgacgttggcgagcaatacccat |
251 |
Q |
| |
|
|||||||||| ||| |||| || || ||||| | || ||| ||| ||| |||||||||| || || ||||| ||||||||||||||||| ||||| | |
|
|
| T |
3205211 |
tgacatctttagcagttgttccgggaacattctctgagaatgcaagcacgctgtctctcagtccgtcaacaattgcttgacgttggcgagctataccgag |
3205112 |
T |
|
| Q |
252 |
cccagagagatatttggactcagcctcaccctcggctcgctttatttgcaagatcttctctgcctccgctttctccttagctgctaacctcattcttgca |
351 |
Q |
| |
|
|| || ||||||||||||||||| || || || ||| ||| || ||||| ||||| ||||| || || ||||| || || || ||||||||||||||| |
|
|
| T |
3205111 |
tcctgacagatatttggactcagcttctccttcagctttcttgatctgcaatatcttttctgcttcagccttctcgttcgcagccaacctcattcttgca |
3205012 |
T |
|
| Q |
352 |
gctg |
355 |
Q |
| |
|
|||| |
|
|
| T |
3205011 |
gctg |
3205008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 25103000 - 25103060
Alignment:
| Q |
103 |
ccaatttctttcaaagtgtcaaagtattgagtgacaaggaccatatccatgacatcttttg |
163 |
Q |
| |
|
||||| || ||||| |||||||||||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
25103000 |
ccaatctccttcaatgtgtcaaagtattgggtcacaagaaccatgtccatgacatcctttg |
25103060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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