View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_20 (Length: 260)
Name: NF7463_low_20
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 55381511 - 55381265
Alignment:
| Q |
2 |
cctttacattggttccctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaataccaaccagagcttttaaaccactcccac |
101 |
Q |
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| T |
55381511 |
cctttacattggttccctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaagaccaaccagagcttttaaaccactcccac |
55381412 |
T |
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| Q |
102 |
ttctccctttacattggttccctaattgaaaggaagctcttcacgccatccaagttcacacctgaaaccacaggaccttctttataacggcaagacctca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55381411 |
ttctccctttacattggttccctaattgaaaggaagctcttcacgccatccaagttcacacctgaaaccacaggaccttctttataacggcaagacctca |
55381312 |
T |
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| Q |
202 |
aacacaattactataaccacccaaataaagcaaacatcatgaatatt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55381311 |
aacacaattactataaccacccaaataaagcaaacatcatgaatatt |
55381265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 55381601 - 55381494
Alignment:
| Q |
17 |
cctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaataccaaccagagcttttaaaccactcccacttctccctttacatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55381601 |
cctcgggctcctgcctacatcattccactttgacctcaaccaccaaaagcaccaataccaaccagagcttttaaaccactcccacttctccctttacatt |
55381502 |
T |
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| Q |
117 |
ggttccct |
124 |
Q |
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|||||||| |
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| T |
55381501 |
ggttccct |
55381494 |
T |
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