View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_22 (Length: 254)
Name: NF7463_low_22
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 1482017 - 1482261
Alignment:
| Q |
1 |
cattatgaattaagttattgttgttaatattctgttgttttgttgatttgttatgtgatgatgagtgtttatattttagttctatctgattagtttgaat |
100 |
Q |
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| T |
1482017 |
cattatgaattaagttattgttgttaatattctgttgttttgttgatttgttatgtgatgatgagtgtttatattt-agttctatctgattagtttgaat |
1482115 |
T |
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| Q |
101 |
ttgaattaatttagtgttgttaatattgtgtttaggtgattgagagaaggagggagagactgggaactgtggagattgagcaaactggaacaccagttca |
200 |
Q |
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| T |
1482116 |
ttgaattaatttagtgttgttaatattgtgtttaggcgattgagagaaggagggagagactgggaactgaggagattgagcaaactggaacaccagttca |
1482215 |
T |
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| Q |
201 |
tgctaaccagctgaccattttctctgatccatcttcattctctgct |
246 |
Q |
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| T |
1482216 |
tgctaaccagctgaccattttctctgatccatcttcattctctgct |
1482261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 75 - 246
Target Start/End: Original strand, 36716878 - 36717049
Alignment:
| Q |
75 |
tttagttctatctgattagtttgaatttgaattaatttagtgttgttaatattgtgtttaggtgattgagagaaggagggagagactgggaactgtggag |
174 |
Q |
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| T |
36716878 |
tttagttccatcttattaatttgaatatgaactaaattagtgttgttaatattgtgtttaggcgattgagagaaggagggagagacagggaactgaggaa |
36716977 |
T |
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| Q |
175 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
246 |
Q |
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| T |
36716978 |
attgagcaaactggaacaccagttcatgctaaccagctgaccattttctctgatccatcttcattctctgct |
36717049 |
T |
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