View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_23 (Length: 251)
Name: NF7463_low_23
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 34044839 - 34044633
Alignment:
| Q |
12 |
catcatcag-caactcctccgcctgcaccaacacctgcacccgcgccttcccctttcccatgtcctgtactcgcttgatcaacccagtccactcttcgtc |
110 |
Q |
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| T |
34044839 |
catcatcaggcaactcctccgcctgcaccaacacctgcacccgcgccttcccctttctcatgtcctgtacttgcttgatcaacccagtccactcttcgtc |
34044740 |
T |
|
| Q |
111 |
ttcatcttctttggatgttccagcttctttaatttcctcttggggtactgccacaactttacttgtagtggagcgagttcctggttcagtgctctcaatc |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34044739 |
ttcattttctttggatgttccagcttctttaatttcctcttggggtactgccgcaactttacttgtagtggagcgagttcctggttcagtgctctcaatc |
34044640 |
T |
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| Q |
211 |
tggatgt |
217 |
Q |
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||||||| |
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| T |
34044639 |
tggatgt |
34044633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 4044761 - 4044959
Alignment:
| Q |
19 |
agcaactcctccgcctgcaccaacacctgcacccgcgccttcccctttcccatgtcctgtactcgcttgatcaacccagtccactcttcgtcttcatctt |
118 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4044761 |
agcaactcctccgcttgcaccaacacctgcacccgagccttcctctttcccatgtcctgtacttgcttgatcaacccagtccactcttcgtcttcatctt |
4044860 |
T |
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| Q |
119 |
ctttggatgttccagcttctttaatttcctcttggggtactgccacaactttacttgtagtggagcgagttcctggttcagtgctctcaatctggatgt |
217 |
Q |
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||| |||||||||||||||||| |||||||||| || |||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
4044861 |
cttcggatgttccagcttctttgatttcctcttcagggactgccgtaactttacttgaggtggagcgagttcctgattcagtgctctcaatctggatgt |
4044959 |
T |
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