View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_26 (Length: 240)
Name: NF7463_low_26
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 51540139 - 51539933
Alignment:
| Q |
13 |
cattattcttatattatcttaaatattgtagagtgttcggattattttaatctgaatctcctaaacattcagaaaataccttcaaattaccatggttctt |
112 |
Q |
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| T |
51540139 |
catttttcttatattatcttaaatattgtagaatgttcggattattt-aatatgaatctcctaaacattcagaaaataccttcaaattaccatggttctt |
51540041 |
T |
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| Q |
113 |
aaaattcttgtttcaaaatagtttgaaaaacataaatcgnnnnnnntactaatacttcagattatataatgtaaaatgtgtgaacgtatgaaaaacaaat |
212 |
Q |
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| T |
51540040 |
aaaattcttgtttcaaaatagtttgaaaaacataaatcg-aaaaaatactaatacttcagattatttaatgtaaaatgtggggacgtatgaaaaacaaat |
51539942 |
T |
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| Q |
213 |
gctcgtaga |
221 |
Q |
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|||| |||| |
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| T |
51539941 |
gctcttaga |
51539933 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 29299005 - 29299053
Alignment:
| Q |
60 |
taatctgaatctcctaaacattcag-aaaataccttcaaattaccatgg |
107 |
Q |
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|||||||||||||||||| || ||| ||||||| ||||||||||||||| |
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| T |
29299005 |
taatctgaatctcctaaaaatccagcaaaatacattcaaattaccatgg |
29299053 |
T |
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