View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_29 (Length: 229)
Name: NF7463_low_29
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 49256139 - 49255932
Alignment:
| Q |
19 |
actaatgtataagaatggaatcaatatttgactataagtaaccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagg |
118 |
Q |
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| T |
49256139 |
actaatttataagaatggaatcagtatttgactataagtaaccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagg |
49256040 |
T |
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| Q |
119 |
gaaagttataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagct |
218 |
Q |
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| T |
49256039 |
gaaagttataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagct |
49255940 |
T |
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| Q |
219 |
gaaatgat |
226 |
Q |
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|||||||| |
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| T |
49255939 |
gaaatgat |
49255932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 49269004 - 49268906
Alignment:
| Q |
124 |
ttataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaa |
222 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||||| |
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| T |
49269004 |
ttataccatatggataagactgaagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaaa |
49268906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 49273738 - 49273704
Alignment:
| Q |
189 |
taggagctcaaatgaccaccactcaaagctgaaat |
223 |
Q |
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| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaaat |
49273704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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