View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_3 (Length: 632)
Name: NF7463_low_3
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 238 - 623
Target Start/End: Complemental strand, 49254965 - 49254565
Alignment:
| Q |
238 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
337 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
|
| Q |
338 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac---c |
434 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagc |
49254766 |
T |
|
| Q |
435 |
accctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgtt |
521 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
49254765 |
accctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgtt |
49254667 |
T |
|
| Q |
522 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcacatgtgatgctcgaacgaacnnnnnnnaatgtaatagtttgctccgaaca |
621 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49254666 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcacatgtgatgctcgaacgaactttttttaatgtaatagtttgctccgaaca |
49254567 |
T |
|
| Q |
622 |
cg |
623 |
Q |
| |
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|| |
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| T |
49254566 |
cg |
49254565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 49256132 - 49255932
Alignment:
| Q |
1 |
tataagaatggaatcaatatttgactataagtaaccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagggaaagtt |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256132 |
tataagaatggaatcagtatttgactataagtaaccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagggaaagtt |
49256033 |
T |
|
| Q |
101 |
ataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49256032 |
ataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatga |
49255933 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
49255932 |
t |
49255932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 238 - 480
Target Start/End: Complemental strand, 49267227 - 49266985
Alignment:
| Q |
238 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
337 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
|
| Q |
338 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccacc |
437 |
Q |
| |
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|||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
|
| Q |
438 |
ctctgtgtctttctctaacaaacctttatccatattttctagc |
480 |
Q |
| |
|
||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
49267027 |
ttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 208 - 388
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
208 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
|
| Q |
304 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
388 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 238 - 424
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
238 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
337 |
Q |
| |
|
||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
|
| Q |
338 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
424 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 49269004 - 49268906
Alignment:
| Q |
99 |
ttataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaa |
197 |
Q |
| |
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||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||||| |
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| T |
49269004 |
ttataccatatggataagactgaagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaaa |
49268906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 164 - 198
Target Start/End: Complemental strand, 49273738 - 49273704
Alignment:
| Q |
164 |
taggagctcaaatgaccaccactcaaagctgaaat |
198 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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|
| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaaat |
49273704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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