View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_30 (Length: 218)
Name: NF7463_low_30
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_30 |
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| [»] chr5 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 17717255 - 17717067
Alignment:
| Q |
25 |
tctaccactttctttgcttttgccttagaacatgaacatttaggccgtgacggaggttgcttgaactatgggctcagcagcaccacttgctacttgaaca |
124 |
Q |
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| T |
17717255 |
tctaccactttctttgcttttgccttagaacatgaacatttaggccgagacggaggttgcttgaactatgggctcagcagcaccacttgctact-----a |
17717161 |
T |
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| Q |
125 |
tctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacgatattcatctccctataaccactcgctactagcattaatat |
218 |
Q |
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| T |
17717160 |
tctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacaatattcatctccctataaccactcgctactagcattaatat |
17717067 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 51377306 - 51377400
Alignment:
| Q |
124 |
atctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacgatattcatctccctataaccactcgctactagcattaatat |
218 |
Q |
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| T |
51377306 |
atctagccaacccaaatcatcgtcatcataaacaacatcaccttcacctccacggcattcatctcccaataaccattcgctactaccattaatat |
51377400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 2948318 - 2948231
Alignment:
| Q |
91 |
tatgggctcagcagcaccacttgctacttgaacatctagccaaccaaactcatcattatcatagacaacatcaacttgacctacacga |
178 |
Q |
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| T |
2948318 |
tatgggctcggcagcaccactcgcctcttcaacatctagcaaacctaaatcatcatcatcataaacaacctcactttgaccttcacga |
2948231 |
T |
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