View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_4 (Length: 556)
Name: NF7463_low_4
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 21 - 548
Target Start/End: Original strand, 37667701 - 37668218
Alignment:
| Q |
21 |
agctcatcttccttcaaatcttgcaaacccattaatgctgagttttttcttaaactctctaaagtgatcacacctttttctttatccataagtaacttga |
120 |
Q |
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| T |
37667701 |
agctcatcttccttcaaatcttgcaaacccatcaatgctgagttttttcttagactctccaaagtgatcacacctttttctttatccataagtaacttga |
37667800 |
T |
|
| Q |
121 |
aaccattacatagttccttcattaaaccttcaccacctagcttattcgcgatcaccggtaacaaatcctcaaagtcaattcctttgccaatttcagccat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37667801 |
aaccattacatagttccttcattaaaccttcaccacctagcttattcgcgatcaccggtaacaaatcctcaaagtcaattcctttgccaatttcagccat |
37667900 |
T |
|
| Q |
221 |
cctttaatatcaatacaaaaatttgttgaagaaatatgaatatatatgaatgtatgtaatgtgagttttttctttgatgaaggtgatgaatgaatattga |
320 |
Q |
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| T |
37667901 |
cctttaatatcaatacaaaaatttgttgaagaaatat----------gaatgtatgtaatgtgagttttttctttgatgaaggtgatgaatgaatattga |
37667990 |
T |
|
| Q |
321 |
actgtttatatagatatataagatgagggggttcaaggaaagtggtgaagaaatttgatgaacccttataagatgacagcaagggaacagataattatta |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37667991 |
actgtttatatagatatataagatgagggggttcaaggaaagtggtgaagaaatttgatgaacccttataagatgacagcaagggaacagataattatta |
37668090 |
T |
|
| Q |
421 |
gctttttgattgtgaagaacaaaaacaaaccgcaattgcttccttgtttcctagaagtttgtcgggggtatttctgtcaatttagattattaatctaata |
520 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37668091 |
gctttttgattgtgaagaacaaaaacaaaccgcaattgcttccttgtttcctagaagtttgtcgggggtatttctgtcaatttagattattaatctaata |
37668190 |
T |
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| Q |
521 |
aactttgactaggttctttcaaacacca |
548 |
Q |
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| T |
37668191 |
aactttgactaggttctttcaaacacca |
37668218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 21941607 - 21941438
Alignment:
| Q |
24 |
tcatcttccttcaaatcttgcaaacccattaatgctgagttttttcttaaactctctaaagtgatcacacctttttctttatccataagtaacttgaaac |
123 |
Q |
| |
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|||||||||||||||||||| ||||||| | || | ||||| || ||||| || || || ||||||||||||||||| ||||| | || | || | |
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| T |
21941607 |
tcatcttccttcaaatcttgtaaacccaaaacagcagcgttttgcctcaaactatccaatgttatcacacctttttctttgtccatcaacaattcaaatc |
21941508 |
T |
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| Q |
124 |
cattacatagttccttcattaaaccttcaccacctagcttattcgcgatcaccggtaacaaatcctcaaa |
193 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||| || || ||||| |||||||| || ||||| |
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| T |
21941507 |
cattgcatagctcctttattaaaccttcaccacctagcttgtttgccatcactggtaacaagtcttcaaa |
21941438 |
T |
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