View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_5 (Length: 488)
Name: NF7463_low_5
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Complemental strand, 41702684 - 41702232
Alignment:
| Q |
14 |
atatttgcatacacatgagatttatctaaactaaaagcacctgcacgttcttaccctttaaggaaatataattaattaattaattaaacctttcttcttg |
113 |
Q |
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| T |
41702684 |
atatttgcatacacatgagatttatctaaactaaaagcacccgcacgttcttaccctttaaggaaatataattaattaa--------aactttcttcttg |
41702593 |
T |
|
| Q |
114 |
ttatgactgacttgtgtaagatcttggactatactgtatttgcttttaagagtgagtaattaacaatggtcgtggggtttctttggtacggcaaaatgga |
213 |
Q |
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| T |
41702592 |
ttatgactgacttgtgtaagatcttggactatactgtatttgcttttaagagtgagtaattaacaatggtcgtggggtttctttggtacggcaaaatgga |
41702493 |
T |
|
| Q |
214 |
ttccaacaggttcgcacaagatacttgataggtttccatttagagttaggttaaggtttgaatatgatataccatttctttttctaataaagtatttatt |
313 |
Q |
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|||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702492 |
ttccaacaggttcgcacatgatacttgacagttttccatttagagttaggttaaggtttgaatatgatataccatttctttttctaataaagtatttatt |
41702393 |
T |
|
| Q |
314 |
tattgatgttcaaagtatttatttatagatcgcacttgagagacacaagacaagatcatgaggagcaggtcgagtccatcttctgctgtattctcgggcc |
413 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702392 |
tattgatgttcaaagtaagca-agatagatcgcacttgagagacacaagacaagatcatgaggagcaggtcgagtccatcttctgctgtattctcgggcc |
41702294 |
T |
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| Q |
414 |
tcgtcttttctcagctgcaacaagttcctagacttgaatcgatgtctcccacagcaccacca |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702293 |
tcgtcttttctcagctgcaacaagttcctagacttgaatcgatgtctcccacagcaccacca |
41702232 |
T |
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