View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_6 (Length: 461)
Name: NF7463_low_6
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 2 - 446
Target Start/End: Complemental strand, 40112099 - 40111655
Alignment:
| Q |
2 |
gtaagaactgcatgcaacatccggtgcaagctatgttgctatttatattcatttgtttttaatcatggttannnnnnnaccattatattggttagaagtt |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40112099 |
gtaagaactgcatgcaacatccggtgcaagctatgttgctatttatattcatttgtttttaatcatggttatttttttaccattatattggttagaagtt |
40112000 |
T |
|
| Q |
102 |
tccaccaccgtttaacaataactaatctcgttcgaaaacatatagggcacataaggtggattctccccgcccaacagattttttctccataagcatgatc |
201 |
Q |
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|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40111999 |
tccaccgccgtttaacaataactaatctccgtcgaaaacatatagggcacataaggtggattctccccgcccaacagattttttctccatacgcatgatc |
40111900 |
T |
|
| Q |
202 |
caattaacgacatgcttaagggatttgagttccttaccacttggaccaattcattgttgattaatcttaatatgcttttctaatcgtggcttttgtagaa |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40111899 |
caattaacgacatgcttaagggatttgagttccttaccacttggaacaattcattgttgattaatcttaatatgcttttctaatcgtggcttttgtagaa |
40111800 |
T |
|
| Q |
302 |
gaaagaagtctgtattatttgtatctctcaataccatatgaaaaattttggatttttccatggggttattttggatatttaatagaacgtatacattgtt |
401 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40111799 |
gaaagaagtctgtattatttgtatctctaaataccatatgaaaaattttggatttttccatggggttattttggatatttaatagaacgtatacattgtt |
40111700 |
T |
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| Q |
402 |
tattagtgtgggtggatccttggttccactcgaaagtatgtgtat |
446 |
Q |
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| T |
40111699 |
tattagtgtgggtggatccttggttccactcgaaagtatgtgtat |
40111655 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 43460271 - 43460320
Alignment:
| Q |
211 |
acatgcttaagggatttgagttccttaccacttggaccaattcattgttg |
260 |
Q |
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||||||||||||| || ||| ||||||||||||||||||| |||||||| |
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|
| T |
43460271 |
acatgcttaaggggttcaagtcccttaccacttggaccaatccattgttg |
43460320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 32729307 - 32729359
Alignment:
| Q |
80 |
accattatattggttagaagtttccaccaccgtttaacaataactaatctcgt |
132 |
Q |
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||||| |||||||| ||||||||||| |||| |||||||| ||||||||||| |
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| T |
32729307 |
accatgatattggtatgaagtttccacaaccgcttaacaatgactaatctcgt |
32729359 |
T |
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