View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_8 (Length: 440)
Name: NF7463_low_8
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 239 - 422
Target Start/End: Original strand, 32849295 - 32849478
Alignment:
| Q |
239 |
ttaccttagaggaatgtttgttctttttgagtgaagtggatgatttccccataagagtaatcgacctgcaaaatgaactttgaaaaagaaaagggattag |
338 |
Q |
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| T |
32849295 |
ttaccttagaggaatgtttgttctttttgagtgaagtggatgatttccccataagagtaatcgacctgcaaaatgaactttgaaaaagaaaagggattag |
32849394 |
T |
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| Q |
339 |
aaaattgaaaagcgatagtgaagaagggatttgtgtaaagaagcgattagggttagatgaatgcagagaaaatgtcgtgattga |
422 |
Q |
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| T |
32849395 |
aaaattgaaaagcgatagtgaagaagggatttgtgtaaagaagcgattagggttagatgaatgcagagaaaatgtcgtgattga |
32849478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 32849101 - 32849194
Alignment:
| Q |
61 |
cagatttttatctaccgggaaacatgaattgtacactaagtttcagttaagttgacaacaaagcagaaagcaataaatagcaataccttacatc |
154 |
Q |
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| T |
32849101 |
cagatttttatctactgggaaacatgaattgtacactaagtttcagttaagttgacaacaaagcagaaagcaataaatagcaataccttacatc |
32849194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 16330247 - 16330316
Alignment:
| Q |
310 |
aatgaactttgaaaaagaaaagggattagaaaattgaaaagcgatagtgaagaagggatttgtgtaaaga |
379 |
Q |
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| T |
16330247 |
aatgaactttgaaaaagaaaagggattagaaaattgaggagtgatagtgaagaagggatttgtgtaaaga |
16330316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 310 - 379
Target Start/End: Original strand, 43629672 - 43629741
Alignment:
| Q |
310 |
aatgaactttgaaaaagaaaagggattagaaaattgaaaagcgatagtgaagaagggatttgtgtaaaga |
379 |
Q |
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| T |
43629672 |
aatgaactttgaaaaagaaaagggattaaaaaattgaagagcgatagtgaagaagggatttgtgtaaaga |
43629741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 310 - 379
Target Start/End: Complemental strand, 19798277 - 19798208
Alignment:
| Q |
310 |
aatgaactttgaaaaagaaaagggattagaaaattgaaaagcgatagtgaagaagggatttgtgtaaaga |
379 |
Q |
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| T |
19798277 |
aatgaactttgaaaaagaaaagggattagaaaattgaggagtgatagtgaagaagggatttgtgtaaaga |
19798208 |
T |
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