View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7463_low_9 (Length: 417)
Name: NF7463_low_9
Description: NF7463
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7463_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 8711108 - 8711432
Alignment:
| Q |
69 |
cggcgcaaatctgggtctgtagaggaaatccataagataaacattcctattcttgaacataatttgcagatattaacaatatcaatttctatttaagaaa |
168 |
Q |
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|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8711108 |
cggcacaaatctggatctgtagaggaaatccataagataaacattcctattcttgaacataatttacagatattaacaatatcaatttctatttaagaaa |
8711207 |
T |
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| Q |
169 |
attataggttaaaaattcaaaaatttccccaaaatttttcggtagctacaatggtggatctggaagagttgagggaatatggaaagcgaaaagaaagtaa |
268 |
Q |
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|| ||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
8711208 |
atcataggataaaagttcaaaaatttccccataatttttccgtagctacaatggtggatctggaagagttgagggaataggtaaagcgaaaagaaagtaa |
8711307 |
T |
|
| Q |
269 |
aaattatttggtgttgtgagtacatgttaacaaccatagagcttcactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatg |
368 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8711308 |
aaattatttgatgttgtgagtacatgttaacaaccatagagcttcactatctaatggctgaaaaacaatattcttccttacctatggtgagagacctatg |
8711407 |
T |
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| Q |
369 |
aagctctcccaccctagactttccc |
393 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
8711408 |
aagctctcccacccaagactttccc |
8711432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 8711019 - 8711079
Alignment:
| Q |
11 |
gtggtcggcattgatgagtcagactaacgaaggaagaggtcagcgttaagatcgttgtcgg |
71 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
8711019 |
gtggtcggcattgatgggtcagacgaacgaaggaagaggtcagcgttaagattgttgtcgg |
8711079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 28225048 - 28225080
Alignment:
| Q |
354 |
ggtgagagacctatgaagctctcccaccctaga |
386 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |
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| T |
28225048 |
ggtgagagacctattaagctctcccaccctaga |
28225080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 73 - 389
Target Start/End: Complemental strand, 22369954 - 22369638
Alignment:
| Q |
73 |
gcaaatctgggtctgtagaggaaatccataagataaacattcctattcttgaacataatttgcagatattaacaatatcaatttctatttaagaaaatta |
172 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22369954 |
gcaaatctgggtctgtagaggaaatccataagataaacattcctattcttgaacataatttgcagatattaacaatatcaatttctatttaagaaaatca |
22369855 |
T |
|
| Q |
173 |
taggttaaaaattcaaaaatttccccaaaatttttcggtagctacaatggtggatctggaagagttgagggaatatggaaagcgaaaagaaagtaaaaat |
272 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| | |
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| T |
22369854 |
taggataaaaattcaaaaatttccccataatttttccgtagctacaatggtggatccggaagagttgagggaatagggaaagcaaaaagaaagtaaattt |
22369755 |
T |
|
| Q |
273 |
tatttggtgttgtgagtacatgttaacaaccatagagcttcactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatgaagc |
372 |
Q |
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| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22369754 |
tttttggtattgtgagtacatgttaacaaccatagagcttcactatctagtggctgaaaaacaatattcttccttgcctatggtgagagacctatcaagc |
22369655 |
T |
|
| Q |
373 |
tctcccaccctagactt |
389 |
Q |
| |
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||||||||||||||||| |
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| T |
22369654 |
tctcccaccctagactt |
22369638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 22370047 - 22369987
Alignment:
| Q |
11 |
gtggtcggcattgatgagtcagactaacgaaggaagaggtcagcgttaagatcgttgtcgg |
71 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||| | ||||||| |||||||| |
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| T |
22370047 |
gtggtcggcattgatgggtcagacgaacgaaggaagaggtcaacattaagattgttgtcgg |
22369987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 69 - 393
Target Start/End: Original strand, 41735587 - 41735891
Alignment:
| Q |
69 |
cggcgcaaatctgggtctgtagaggaaatccataagataaacattcctattcttgaacataatttgcagatattaacaatatcaatttctatttaagaaa |
168 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41735587 |
cggcgcaaatctggatctgtagaggaaatccataagataaacattcctatt--------------------attaacaatatcaatttctatttaagaaa |
41735666 |
T |
|
| Q |
169 |
attataggttaaaaattcaaaaatttccccaaaatttttcggtagctacaatggtggatctggaagagttgagggaatatggaaagcgaaaagaaagtaa |
268 |
Q |
| |
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|| ||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |
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| T |
41735667 |
atcataggataaaaattcaaaaatttccccataatttttccgcagctacaatggtggatctggaagagtttagggaataggtaaagcgaaaagaaagtaa |
41735766 |
T |
|
| Q |
269 |
aaattatttggtgttgtgagtacatgttaacaaccatagagcttcactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatg |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41735767 |
aaattatttggtgttgtgagtacatgttaacaaccatagagcttcactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatc |
41735866 |
T |
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| Q |
369 |
aagctctcccaccctagactttccc |
393 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
41735867 |
aagctctcccaccctagactttccc |
41735891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 41735498 - 41735558
Alignment:
| Q |
11 |
gtggtcggcattgatgagtcagactaacgaaggaagaggtcagcgttaagatcgttgtcgg |
71 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
41735498 |
gtggtcggcattgatgggtcagacgaacgaaggaagaggtcagcgttaagattgttgtcgg |
41735558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 385
Target Start/End: Complemental strand, 12846110 - 12846027
Alignment:
| Q |
303 |
catagagctt-cactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatgaagctctcccaccctag |
385 |
Q |
| |
|
|||||||||| ||||||| || ||||||||| |||||| || || || | |||||||||||||| ||||||||||||||||| |
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| T |
12846110 |
catagagctttcactatccaacggctgaaaataaatatttttactctcccacggtgagagacctatcaagctctcccaccctag |
12846027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 385
Target Start/End: Original strand, 44123522 - 44123605
Alignment:
| Q |
303 |
catagagctt-cactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatgaagctctcccaccctag |
385 |
Q |
| |
|
|||||||||| ||||||| || ||||||||| |||||| || || || | |||||||||||||| ||||||||||||||||| |
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|
| T |
44123522 |
catagagctttcactatccaacggctgaaaataaatatttttactctcccacggtgagagacctatcaagctctcccaccctag |
44123605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 385
Target Start/End: Complemental strand, 5666074 - 5666000
Alignment:
| Q |
311 |
ttcactatctaatggctgaaaaacaatattcttccttgcctatggtgagagacctatgaagctctcccaccctag |
385 |
Q |
| |
|
||||||||| || ||||||||| |||||| || || |||| ||||||||||||| ||||||||||||||||| |
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| T |
5666074 |
ttcactatccaacggctgaaaataaatatttttgctctcctacagtgagagacctatcaagctctcccaccctag |
5666000 |
T |
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