View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7464_high_2 (Length: 335)

Name: NF7464_high_2
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7464_high_2
NF7464_high_2
[»] chr3 (1 HSPs)
chr3 (18-311)||(32729172-32729466)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 311
Target Start/End: Complemental strand, 32729466 - 32729172
Alignment:
Q  18 actataagtagtaaacaatttttcgttctaacagttgaaatttcggaaagggaatctgnnnnnnnn-attaccaaaactgttcctcaaatacaaaccttg 116  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||         ||||||| |||||||||||||||||||||||||    
T  32729466 actataagtagtaaacaatttttcattctaacagttgaaatttcggaaagggaatctgtttttttttattaccacaactgttcctcaaatacaaaccttg 32729367  T
Q  117 aacttccaaatggaattaccttggaaacgttgagcaatggcgtaagagcaaacattcccaaagtaatgacgtgtaatcaagagaatctcagccattgaga 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32729366 aacttccaaatggaattaccttggaaacgttgagcaatggcgtaagagcaaacattcccaaagtaatgacgtgtaatcaagagaatctcagccattgaga 32729267  T
Q  217 tggtgcctagtactatacggacggttacaatatagttaaaggcagtaggatatgcacgacaaactttattttaacattttcgtttgatatagaga 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32729266 tggtgcctagtactatacggacggttacaatatagttaaaggcagtaggatatgcacgacaaactttattttaacattttcgtttgatatagaga 32729172  T

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