View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7464_high_6 (Length: 230)
Name: NF7464_high_6
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 3949080 - 3949005
Alignment:
| Q |
19 |
atatatactaatttatatttgctctaagcagtgtcgtattaaaatcatattggcttggtgcaaactatatagatttt |
95 |
Q |
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| T |
3949080 |
atatatactaatttatatt-gctctaagcagtgtcgtattaaaatcatattggcttggtgcaaactatatatatttt |
3949005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 117 - 164
Target Start/End: Complemental strand, 3948962 - 3948915
Alignment:
| Q |
117 |
atggtccaagcccactattaccaagtattgaccttaattaaatttccc |
164 |
Q |
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| T |
3948962 |
atggtccaatcccactattaccaagtattgaccttaattaaatttccc |
3948915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 216
Target Start/End: Complemental strand, 3948828 - 3948779
Alignment:
| Q |
166 |
tctattttcacatctatatttgttcctttttctatctcattttgatgtcca |
216 |
Q |
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| T |
3948828 |
tctattttcacatctatatttgttcc-ttttctatctcattttgatttcca |
3948779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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