View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7464_low_16 (Length: 207)
Name: NF7464_low_16
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 33964360 - 33964188
Alignment:
| Q |
18 |
aaaagttgttgattgattagattattttgttacataaagagttgttgatcattgattagatttataataatgtttgtgacacttacttttaaatagggat |
117 |
Q |
| |
|
|||||||||||||||||||| || |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33964360 |
aaaagttgttgattgattaggttcttttgttaca-aaagagttgttgat---tgattagatt-ataataatgtttgtgacacttacttttaaatagggat |
33964266 |
T |
|
| Q |
118 |
gtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagtagtatgttacaagacacaggtt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
33964265 |
gtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaaggagcagtatgttacaagacacaggtt |
33964188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 171
Target Start/End: Original strand, 43077815 - 43077876
Alignment:
| Q |
110 |
atagggatgtcacgtgcatgcaatagcaagaaatacaggagcactaacagcacaaggaagga |
171 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
43077815 |
ataggggtgtcacgtgcatgcaatagcacaaaatataggagcactaacagcacaaggaagga |
43077876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University