View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7464_low_2 (Length: 464)
Name: NF7464_low_2
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 458
Target Start/End: Original strand, 54638207 - 54638649
Alignment:
| Q |
16 |
cagggggatctatatgatcatcaaagtttggtgaaagcaataaaacaggttgatgttgtaatttgtactgtggctcgctcgcacttgagtgatcaagata |
115 |
Q |
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| T |
54638207 |
cagggggatctatatgatcatcaaagtttggtgaaagcaataaaacaggttgatgttgtaatttctactgtggctcgctcgcacttgagtgatcaagata |
54638306 |
T |
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| Q |
116 |
aaatcatctctgccatcaaagaagcaggaaatgttaaggtacattcaaaaactcaaaaatatcttcattatttactatatgatatgaatatcttcattgt |
215 |
Q |
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| T |
54638307 |
aaatcatctctgccatcaaagaagcaggaaatgttaaggtacattcaaaaactcaaaaatatcttcattatttactatatgatatgaatatcttcattgt |
54638406 |
T |
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| Q |
216 |
ttatagagattctttccttctgaattcggaaatgatgtggatcggagtcatgcagttgaaccagcaaagagtgcatacgccgttaaagccagaattcggc |
315 |
Q |
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| T |
54638407 |
ttatagagattctttccttctgaattcggaaatgatgtggatcggagtcatgcggttgaaccagcaaagagtgcatacgccgttaaagccagaattcggc |
54638506 |
T |
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| Q |
316 |
gcagcattgaggcagaaggaattccatacacttacgtgtcaagtaactactttgctggttacttcctaccctctttgtcacagcatggagcttcagctcc |
415 |
Q |
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| T |
54638507 |
gcagcattgagtcagaaggaattccatacacttacgtgtcaagtaactactttgctggttacttcctaccctctttgtcacagcatggagcttcagctcc |
54638606 |
T |
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| Q |
416 |
accaagagataaagttgttatcctaggagatggaaacaccaaa |
458 |
Q |
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| T |
54638607 |
accaagagataaagttgttatcctaggagatggaaaccccaaa |
54638649 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 26513812 - 26513862
Alignment:
| Q |
106 |
gatcaagataaaatcatctctgccatcaaagaagcaggaaatgttaaggta |
156 |
Q |
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| T |
26513812 |
gatcaatataagatcatttcagccatcaaagaagctggaaatgttaaggta |
26513862 |
T |
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