View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7464_low_3 (Length: 416)
Name: NF7464_low_3
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 27829983 - 27829661
Alignment:
| Q |
17 |
caataccatattaaaatttgggttgaacatatctcaactctacaaaactgacatgtataaagcaaggattgctctcacttataaacaagtcttcatgtca |
116 |
Q |
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| T |
27829983 |
caataccatattaaaatttgggttgaacatatctcaactctacaaaactgacatgtataaagcaaggattgctctcatttataaacaagtcttcatgtca |
27829884 |
T |
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| Q |
117 |
tatcttatcaaatatgggacacttaaccagatttttgaagaccaaatcgatgttatttatttctcaagatcaaataggtcacatagcaaagacttctagg |
216 |
Q |
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| T |
27829883 |
tatctaatcaaatatgggacacttaaccagatttttgaagaccaaatcgatgttatttatttctcaagatcaaataggtcacatagcaaagacttctagg |
27829784 |
T |
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| Q |
217 |
gttacaactgcaaatttaaagtatttagacaccctcacataaatagaaaaggtagaaaaagaacactcaannnnnnnnnnnnngctaaaatatttaaatg |
316 |
Q |
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| T |
27829783 |
gttacaactgcaaatttaaagtatttagacaccctcacataaatagaaaaggtagaaaaagaacactcaa-ttttttctttttgctaaaatatttaaatg |
27829685 |
T |
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| Q |
317 |
atgtatatattttatgcgtgtgca |
340 |
Q |
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| T |
27829684 |
atgtatatattttatgtgtgtgca |
27829661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 338 - 401
Target Start/End: Complemental strand, 27829072 - 27829009
Alignment:
| Q |
338 |
gcaattgtgggctttttaaattaggggttgccgcacacaaaatttatattttttggtataatat |
401 |
Q |
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| T |
27829072 |
gcaattgtgggctttttaaattaggggttgccgcacacaaaatttatattttttggtataatat |
27829009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 47863443 - 47863414
Alignment:
| Q |
18 |
aataccatattaaaatttgggttgaacata |
47 |
Q |
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| T |
47863443 |
aataccatattaaaatttgggttgaacata |
47863414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 17113499 - 17113463
Alignment:
| Q |
302 |
taaaatatttaaatgatgtatatattttatgcgtgtg |
338 |
Q |
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| T |
17113499 |
taaaatatttaaatgatggatatattttatgtgtgtg |
17113463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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