View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7464_low_4 (Length: 336)
Name: NF7464_low_4
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 32511584 - 32511849
Alignment:
| Q |
18 |
agttggtagtttctgacttgtcccttatgcttagtttattaaatgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttg |
117 |
Q |
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| T |
32511584 |
agttggtagtttctgacttgtcccttatgcttagtttattaaatgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttg |
32511683 |
T |
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| Q |
118 |
attcagtttcttgtcctcttcagcattatggaaacagtttctctgcttagcatctacaacaacttttctccacacagagttaccattaatcaaagttgtt |
217 |
Q |
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| T |
32511684 |
atccaatttcttgtcctcatcagcattatgaaaacagtttctctgcttagcatccataacaacttttctccacacagagttactattaatcaaagttgtt |
32511783 |
T |
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| Q |
218 |
gcattaccaactatccaaaggcaatatctgcaacaaataaaatcagtttaaatcaacatgtgtgca |
283 |
Q |
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| T |
32511784 |
gcatttccaactatccaaaggcaatatctgcaacaaatataatcagtttaaatcaacatgtgtgca |
32511849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 26 - 250
Target Start/End: Complemental strand, 32545797 - 32545573
Alignment:
| Q |
26 |
gtttctgacttgtcccttatgcttagtttattaaatgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtt |
125 |
Q |
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| T |
32545797 |
gtttctgacatgtcccttatgcttagtttattaaatgctgatgcagattcatctagtagttcaaattcaaagcatgcatcctcaataacttgatccaatt |
32545698 |
T |
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| Q |
126 |
tcttgtcctcttcagcattatggaaacagtttctctgcttagcatctacaacaacttttctccacacagagttaccattaatcaaagttgttgcattacc |
225 |
Q |
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| T |
32545697 |
tcttgtcctcatcagtattatggaaacaatctctttccttggcatcaacaacaacctttctccacacagaattactattaactaaggttgtagcatttcc |
32545598 |
T |
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| Q |
226 |
aactatccaaaggcaatatctgcaa |
250 |
Q |
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| T |
32545597 |
tacaatccaaaggcaatatctgcaa |
32545573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 147
Target Start/End: Original strand, 32644183 - 32644280
Alignment:
| Q |
50 |
agtttattaaatgctgattcagattcatctagtagttcaaactcaaagcatgcatcctcaataacttgattcagtttcttgtcctcttcagcattatg |
147 |
Q |
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||||| ||||||| ||| |||||||| || || ||||||| |||||| | |||| ||||||||| || ||||||||||||||| ||||||||||| |
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| T |
32644183 |
agtttcttaaatggtgactcagattcttcaagaagttcaatctcaaacaagacatcatcaataactcgagccagtttcttgtcctcatcagcattatg |
32644280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 32570686 - 32570561
Alignment:
| Q |
124 |
tttcttgtcctcttcagcattatggaaacagtttctctgcttagcatctacaacaacttttctccacacagagttaccattaatcaaagttgttgcatta |
223 |
Q |
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| T |
32570686 |
tttcttgttctctgcagcattatggaaacaatctcttctcttagcatcaagaactacatttctccaaaccgagtcactgttgattagagtagctgcattt |
32570587 |
T |
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| Q |
224 |
ccaactatccaaaggcaatatctgca |
249 |
Q |
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|| | ||||||||||||||||||||| |
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| T |
32570586 |
cctaatatccaaaggcaatatctgca |
32570561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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