View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7464_low_6 (Length: 305)
Name: NF7464_low_6
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 49664714 - 49664982
Alignment:
| Q |
18 |
ctttcaacgtcaaattgctgcttgnnnnnnnctcccatccttttccagtatttcaaccacatggccccactttattaactttcaaaatttctacatggac |
117 |
Q |
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| T |
49664714 |
ctttcaacgtcaaattgctgcttgtttttttctcccatccttttccagtatttcaaccacatggccccactttattaacttttaaaatttcttcatggac |
49664813 |
T |
|
| Q |
118 |
taactccagaatctagacctctcagttttgatatttttcaatcttagtttccatgcatataacgtaactctactagttttcttcgtgtttattatcgtat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49664814 |
taactccagaatctagacctctcagttttgatatttctcaatcttagtttccatgcatataacgtaactctactagttttcttcgtgtttattatcgtat |
49664913 |
T |
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| Q |
218 |
tttacgtggtataggcggttttggcgcctctaagaccaatagaagaagattcagatgcgaagtttgtga |
286 |
Q |
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| T |
49664914 |
tttacgtggtttagacggttttggcgcctctaagaccaatagaagaagattcagatgcgaagtttgtga |
49664982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 3218099 - 3217937
Alignment:
| Q |
18 |
ctttcaacgtcaaattgctgcttgnnnnnnnctcccatccttttccagtatttcaaccacatggccccactttattaactttcaaaatttctacatggac |
117 |
Q |
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|||||||| ||||||||||||||| ||| |||||||||| ||| || ||| |||| ||||||||||| || | |||||||| ||||||||||| |
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| T |
3218099 |
ctttcaacatcaaattgctgcttgtatttttctctcatccttttcaagtgttccaatcacaaggccccactttctttaacttcaaaatctctacatggac |
3218000 |
T |
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| Q |
118 |
taactccagaatctagacctctcagttttgatatttttcaatcttagtttccatgcatataac |
180 |
Q |
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| T |
3217999 |
tcactccagaaactagacctctcagtttttatatttctcaatcttagtttccatgcagataac |
3217937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 266
Target Start/End: Complemental strand, 3223169 - 3223029
Alignment:
| Q |
125 |
agaatctagacctctcagttttgatatttttcaatcttagtttccatgcatataacgtaactctactagttttcttcgtgtttattatcgt-attttacg |
223 |
Q |
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|||| |||||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||||||||||| | ||| |||||||| | |||||||| |
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| T |
3223169 |
agaagctagacctctcagtttatatatttctcaatcttagtttccatgcagataagataa--ctactagtttttgtagtgcttattatcctaattttacg |
3223072 |
T |
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| Q |
224 |
tggtataggcggttttggcgcctctaagaccaatagaagaaga |
266 |
Q |
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| T |
3223071 |
tggtttagacgattttgggccctccaaaaccagtaaaagaaga |
3223029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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