View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7464_low_7 (Length: 290)
Name: NF7464_low_7
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 580704 - 580449
Alignment:
| Q |
20 |
ctttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctata |
119 |
Q |
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| T |
580704 |
ctttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctata |
580605 |
T |
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| Q |
120 |
caagacatccatctcagccaaaacatcgtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttg |
219 |
Q |
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| T |
580604 |
caagacatccatctcagccaaaacatcgtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttg |
580505 |
T |
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| Q |
220 |
ttacacagaagatatgctccggtccaagtggaggtgattgaactggtgtgatgtcc |
275 |
Q |
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| T |
580504 |
ttacacagaagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcc |
580449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 275
Target Start/End: Original strand, 591723 - 591978
Alignment:
| Q |
20 |
ctttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctata |
119 |
Q |
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| T |
591723 |
ctttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcagggcttctttaatgcacctata |
591822 |
T |
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| Q |
120 |
caagacatccatctcagccaaaacatcgtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttg |
219 |
Q |
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| T |
591823 |
caagacatccatctcagccaaaacatcgtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcctccacagcagaaaggtactgtttg |
591922 |
T |
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| Q |
220 |
ttacacagaagatatgctccggtccaagtggaggtgattgaactggtgtgatgtcc |
275 |
Q |
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| T |
591923 |
ttacacagaagatatgctccggtccaagtggaggtgattgaactggtgtgctgtcc |
591978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 37434350 - 37434230
Alignment:
| Q |
147 |
gtgatcaactctatctccgtgtttctccatcaagttcttttgctcctcctcc------acagcagaaaggtactgtttgttacacagaagatatgctccg |
240 |
Q |
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|||||| |||||||| |||||||||||||||||||||| |||||||||||| ||| || |||||||||| || | ||||| |||||||||| | |
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| T |
37434350 |
gtgatccactctatcgtcgtgtttctccatcaagttcttctgctcctcctcctcctccacaacataaaggtactgcttataacacatgagatatgctctg |
37434251 |
T |
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| Q |
241 |
gtccaagtggaggtgattgaa |
261 |
Q |
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| T |
37434250 |
gtccaagtggaggtgattgaa |
37434230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 98
Target Start/End: Complemental strand, 37434440 - 37434363
Alignment:
| Q |
21 |
tttcccctctcttgttgtgacgctgaaatcgctgtgtgagcttctcagcaacataattagtggagggtggagtctcag |
98 |
Q |
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|||||| ||||||||||||||||||||||| | ||||||| |||||||| |||||| | |||||||||||||||||| |
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| T |
37434440 |
tttcccttctcttgttgtgacgctgaaatctccgtgtgagtttctcagcggcataatcaatggagggtggagtctcag |
37434363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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