View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7464_low_8 (Length: 268)
Name: NF7464_low_8
Description: NF7464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7464_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 8 - 209
Target Start/End: Complemental strand, 46011011 - 46010810
Alignment:
| Q |
8 |
agaattgaggtttagtgagatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46011011 |
agaattgaggtttagtgagatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaa |
46010912 |
T |
|
| Q |
108 |
tgcatctccaagaatgtgagcccagctcagtcccactgagagtcctccacatttgaagaatgtgaactnnnnnnntgcttacataatttagttgctttaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46010911 |
tgcatctccaagaatgtgagcccagctcagtcccactgagagtcctccacatttgaagaatgtgaactaaaaaaatgcttacataatttagttgctttaa |
46010812 |
T |
|
| Q |
208 |
at |
209 |
Q |
| |
|
|| |
|
|
| T |
46010811 |
at |
46010810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 13115891 - 13115721
Alignment:
| Q |
5 |
atgagaattgaggtttagtgagatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctga |
104 |
Q |
| |
|
|||||||||||||||| ||||||||| || |||| |||||||||||||||||||| |||||||| | |||||||| ||| ||||||||||| |||||| |
|
|
| T |
13115891 |
atgagaattgaggttttgtgagattttgcttgtgaagagattttggtggagcttggccagctagtatttgactccatttgctgatgaagttaaaagctga |
13115792 |
T |
|
| Q |
105 |
aaatgcatctccaagaatgtgagcccagctcagtcccactgagagtcctccacatttgaagaatgtgaact |
175 |
Q |
| |
|
||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
13115791 |
aaatgcatctccaaggatgtgagcccaactcattcccacagagagtcctccacatttgaagtgtgtgaact |
13115721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 15924047 - 15923908
Alignment:
| Q |
25 |
agatttggcatgtggagagattttggtggagcttgaccagctagggtgtgactccacttggtgatgaagttacgagctgaaaatgcatctccaagaatgt |
124 |
Q |
| |
|
|||||||| ||||| |||||||||||| | | |||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
15924047 |
agatttggaatgtgaagagattttggttgggattgaccagctagtatgtgactccatttggtgatgaaattaaaagctgaaaatgcatctccaaggatgt |
15923948 |
T |
|
| Q |
125 |
gagcccagctcagtcccactgagagtcctccacatttgaa |
164 |
Q |
| |
|
||||||| || ||||| || |||||||| ||||||||||| |
|
|
| T |
15923947 |
gagcccaacttagtccaacagagagtcccccacatttgaa |
15923908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University