View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7465_high_8 (Length: 280)

Name: NF7465_high_8
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7465_high_8
NF7465_high_8
[»] chr1 (1 HSPs)
chr1 (4-280)||(25295722-25296005)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 25296005 - 25295722
Alignment:
Q  4 aatctgtttcttggtccatataaaaatttgttagtatgtttttcacattgaattaatttcatgaatagataatagggttttcgatttcatgaatatcttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25296005 aatctgtttcttggtccatataaaaatttgttagtatgtttttcacattgaattaatttcatgaatagataatagggttttcgatttcatgaatatcttt 25295906  T
Q  104 caatgttatgtttttgactttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcacgttgttattcttgag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25295905 caatgttatgtttttgactttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcaagttgttattcttgag 25295806  T
Q  204 atttctgtatgatttaatgagcaatgattaaaa---tgttcactcatatgattaggat----tatgattaatgcttcttctcac 280  Q
    |||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||    ||||||||||||||||| ||||    
T  25295805 atttctgtatgatttaattagcaatgattaaaatattgttcactcatatgattaggattatatatgattaatgcttcttttcac 25295722  T

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