View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_1 (Length: 557)
Name: NF7465_low_1
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 557
Target Start/End: Original strand, 36335930 - 36336457
Alignment:
| Q |
18 |
acatcatactcaaaagtctatcacagctacagcttttcaaaccccaagaactggacaagtcaaaattcttatcaaaactaactgtttcagtaatatgcaa |
117 |
Q |
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| T |
36335930 |
acatcatactcaaaagtctatcacagctacagcttttcaaaccccaagaactggacaagtcaaaattcttatcaaaactaactgtttcagtaatatgcaa |
36336029 |
T |
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| Q |
118 |
gcaatcatttacatgtcccaacttttatattctcaagtttttcaaattcaattctattaaactacttcagaatataaatcacnnnnnnnnaatgacaaat |
217 |
Q |
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| T |
36336030 |
gcaatcatttacatgtcccaacttttgtattctgaagtgtttcaaattcaattctattaaactacttcagaatataaatcacttttttttaatgacaaat |
36336129 |
T |
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| Q |
218 |
aatatgttaaatgttatgttagttttcttcgttacgaggatctgaagacctccaataatttaacccttagcttgaactagttgagctacccaacccttat |
317 |
Q |
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| T |
36336130 |
aatatgttaaatgttatgttagtttttttcgttacgaggatctgaagacctccaataatttaacccttagcttgaactagttgagctacccaacccttat |
36336229 |
T |
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| Q |
318 |
caatcaaacacttaaatgctgttctagcaacattagaacaaaacattattaaatgacaaacacaatacaaaccaatacaagatgtatcctac-taacaat |
416 |
Q |
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| T |
36336230 |
caatcaaacacttaaatgctgttctagcaacatta-------------ttaaatgacaaacacaatacaaaccaatacaagatgtatccaacctaacaat |
36336316 |
T |
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| Q |
417 |
atcgacattggcagttgaactaactacggattcgaacagaagaaaatgttattaaaaacaaaaacaacattaattgaatgttttaaataaacgaaatgta |
516 |
Q |
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| T |
36336317 |
atcgacattggcagttgaactaactacggattcgaacagaagaaaatgttattaaaaacaaaaacaatattaattcaatgttttaaatagacgaaatgta |
36336416 |
T |
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| Q |
517 |
ttgattatagcaataaccagaagaaaataatagaatacaac |
557 |
Q |
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| T |
36336417 |
ttgattatagcaataaccagaagaaaataatagaatacaac |
36336457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 313
Target Start/End: Original strand, 26940165 - 26940215
Alignment:
| Q |
263 |
agacctccaataatttaacccttagcttgaactagttgagctacccaaccc |
313 |
Q |
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| T |
26940165 |
agacctccaattctttaacccttagctcgaaccagttgatctacccaaccc |
26940215 |
T |
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