View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7465_low_11 (Length: 280)

Name: NF7465_low_11
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7465_low_11
NF7465_low_11
[»] chr1 (1 HSPs)
chr1 (4-280)||(25295722-25296005)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 280
Target Start/End: Complemental strand, 25296005 - 25295722
Alignment:
Q  4 aatctgtttcttggtccatataaaaatttgttagtatgtttttcacattgaattaatttcatgaatagataatagggttttcgatttcatgaatatcttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25296005 aatctgtttcttggtccatataaaaatttgttagtatgtttttcacattgaattaatttcatgaatagataatagggttttcgatttcatgaatatcttt 25295906  T
Q  104 caatgttatgtttttgactttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcacgttgttattcttgag 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25295905 caatgttatgtttttgactttgtttggttgtattaaatgtgaaaagaatagatggattggtgtatttttgtagggatgttatcaagttgttattcttgag 25295806  T
Q  204 atttctgtatgatttaatgagcaatgattaaaa---tgttcactcatatgattaggat----tatgattaatgcttcttctcac 280  Q
    |||||||||||||||||| ||||||||||||||   ||||||||||||||||||||||    ||||||||||||||||| ||||    
T  25295805 atttctgtatgatttaattagcaatgattaaaatattgttcactcatatgattaggattatatatgattaatgcttcttttcac 25295722  T

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