View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_13 (Length: 265)
Name: NF7465_low_13
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 49054970 - 49054732
Alignment:
| Q |
18 |
cttctaccgcaactgaagcatttaagccctaaactacaacctgtcaattgatcgtcaagtaatcacacatcttccatcaaccatcaacaaacaatgcatc |
117 |
Q |
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| T |
49054970 |
cttctaccgcaaccgaagcatttaagccctaaactacaatctgtaaattgatcgtcaagtaatcacacatcttccatcaaccatcaacaaacaatgcatc |
49054871 |
T |
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| Q |
118 |
aaggaggtttgaagatgaattgctactctcagcctcttcaaagaaaccagtggcggcattccctcttctggctctacgctcttcgatgacgggatcatct |
217 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
49054870 |
aaggaggtttgaagatgaattgctactctcagcttcttcaaagaaaccattggcggcattctctcttctggctctacgctcttcgatgacggaatcatct |
49054771 |
T |
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| Q |
218 |
gtttcagtgcagtaatttcgtcgaccatgttccacaggt |
256 |
Q |
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| T |
49054770 |
gtttcagtgcagtaatttcgtcgaccatgtttcacaggt |
49054732 |
T |
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