View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_15 (Length: 239)
Name: NF7465_low_15
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_15 |
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| [»] scaffold0855 (1 HSPs) |
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| [»] scaffold0847 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1636897 - 1637119
Alignment:
| Q |
1 |
ctattaaacattgtgttttctgcatcactctacataacgaccaagagagaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagc |
100 |
Q |
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| T |
1636897 |
ctattaaacattgtgttttctgcatcactctacataacgaccaagagagaagcgaagcacatcattgctccaaccaaacctacaacagtccttgaagagc |
1636996 |
T |
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| Q |
101 |
tactaggaggtggagcatcggcagcagccccacctgggcctgcagcatcggctgttggggcttcagcgggagcattggtggcgggcaattttgaaggtga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
1636997 |
tactaggaggtggagcatcggcagcagccccacctgggcctgcagcttcggctgttggggcttcagcgggagcattggtggcgggctctttagaaggtga |
1637096 |
T |
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| Q |
201 |
aggagcagtcgcggactctgaag |
223 |
Q |
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| T |
1637097 |
aggagcagtcgcggactctgaag |
1637119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 1620448 - 1620546
Alignment:
| Q |
31 |
tacataacgaccaagagagaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagcagcc |
129 |
Q |
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| T |
1620448 |
tacataacgaccaagagagaagagaagcacatcacagctccaacaaaacctacaacaatccttgaagagctgctagtaggtgcagcatcggcagcagcc |
1620546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 1628801 - 1628896
Alignment:
| Q |
31 |
tacataacgaccaagagagaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagca |
126 |
Q |
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| T |
1628801 |
tacatgacgaccaagagtgaagcgaagcacatcactgctccaacaaaacctacagcaatccttgaagagctgctagtaggtgcagcatcggcagca |
1628896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 1612265 - 1612363
Alignment:
| Q |
31 |
tacataacgaccaagagagaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagcagcc |
129 |
Q |
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| T |
1612265 |
tacatgacgaccaagagcgaagctaagcacatcactgctccaacaaaacctataacaatccttgaagagctgctagtaggtgcagcatcggcagcagcc |
1612363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0855 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 4990 - 5085
Alignment:
| Q |
31 |
tacataacgaccaagagagaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagca |
126 |
Q |
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||||| || |||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
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| T |
4990 |
tacatgacaaccaagagtgaagcgaagcacatcactgctccaacaaaacctacaacaatccttgaagagctgctaataggtgcagcatcggcagca |
5085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0847 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 5155 - 5250
Alignment:
| Q |
31 |
tacataacgaccaagagagaagcgaagcacatcattgctccaacgaaacctacaacagtccttgaagagctactaggaggtggagcatcggcagca |
126 |
Q |
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||||| || |||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| ||||| ||||||||||||| |
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| T |
5155 |
tacatgacaaccaagagtgaagcgaagcacatcactgctccaacaaaacctacaacaatccttgaagagctgctaataggtgcagcatcggcagca |
5250 |
T |
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