View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_2 (Length: 556)
Name: NF7465_low_2
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 44130500 - 44130128
Alignment:
| Q |
1 |
ggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaaagggnnnnnnnnnnnnnnnnatagagctatcaa |
100 |
Q |
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| T |
44130500 |
ggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaagggggagagagagagaga--atagagctatcaa |
44130403 |
T |
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| Q |
101 |
ttactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactacgacctcac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130402 |
ttactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactacgacctcac |
44130303 |
T |
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| Q |
201 |
ccaacaacaatcatcattattccttcaccttccttccctttctctctgaccaatatccctaaccatcattacactcccacctcttcttttatcacaaaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130302 |
ccaacaacaatcatcattattccttcaccttccttccctttctctctgaccaatatccctaaccatcattacactcccacctcttcttttatcacaaaca |
44130203 |
T |
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| Q |
301 |
tcatcattatcttccaccaaacctttgctaatgatgatcatcatccccttcaccatcacaaatacttccactcaa |
375 |
Q |
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| T |
44130202 |
tcatcattatcttccaccaaacttttgctaatgatgatcatcatccccttcaccatcacaaatacttccactcaa |
44130128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 418 - 538
Target Start/End: Complemental strand, 44130076 - 44129956
Alignment:
| Q |
418 |
accctagctacttcaatattccagtttcaacaacttgattatataaagagtgaagagagtagggtctatagtgtttgctgctaagatccaactatactca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130076 |
accctagctacttcaatattccagtttcaacaacttgattatataaagagtgaagagagtagggtctatagtgtttgctgctaagatccaactatactca |
44129977 |
T |
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| Q |
518 |
tcaactcttggggaatcaagc |
538 |
Q |
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||||||||||||||||||||| |
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| T |
44129976 |
tcaactcttggggaatcaagc |
44129956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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