View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7465_low_3 (Length: 541)

Name: NF7465_low_3
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7465_low_3
NF7465_low_3
[»] chr7 (3 HSPs)
chr7 (43-539)||(46920718-46921215)
chr7 (379-522)||(38024672-38024812)
chr7 (396-522)||(5952805-5952928)
[»] chr6 (4 HSPs)
chr6 (368-522)||(7022845-7022997)
chr6 (368-522)||(34252335-34252487)
chr6 (379-522)||(26292184-26292324)
chr6 (379-461)||(32286100-32286182)
[»] chr2 (2 HSPs)
chr2 (379-522)||(9388771-9388911)
chr2 (379-512)||(9992824-9992953)
[»] chr1 (1 HSPs)
chr1 (368-522)||(5171285-5171437)
[»] chr4 (3 HSPs)
chr4 (379-522)||(19816242-19816382)
chr4 (379-522)||(21375059-21375199)
chr4 (377-522)||(1804557-1804701)
[»] chr8 (1 HSPs)
chr8 (391-521)||(8567517-8567644)
[»] chr3 (2 HSPs)
chr3 (379-523)||(29018508-29018651)
chr3 (379-522)||(55428858-55428998)
[»] chr5 (1 HSPs)
chr5 (472-523)||(28175308-28175359)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 43 - 539
Target Start/End: Complemental strand, 46921215 - 46920718
Alignment:
Q  43 ttactttattctgtttaattaattaattggtgactcacacatgactaaatgacatatcattagtcatatgtcaatttaatcaattctcttttaacacagc 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46921215 ttactttattctgtttaattaattaattggtgactcacacatgactaaatgacatatcattagtcatatgtcaatttaatcaattctcttttaacacagc 46921116  T
Q  143 agaatgtaacatcaacaattttataagatcaaattcgttgaaaaattgtatacgtttagaatggaataaaaatgtggaggggctctgaactagattaatc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46921115 agaatgtaacatcaacaattttataagatcaaattcgttgaaaaattgtatacgtttagaatggaataaaaatgtagaggggctctgaactagattaatc 46921016  T
Q  243 catatttcaagcgtgaaaaatatatttaatattgtttaattcctataataactgtttaagccggaagaggtctaaatgacaaaac-----taaaactaca 337  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     ||||||||||    
T  46921015 catatttcaagcatgaaaaatatatttaatattgtttaattcctataataactgtttaagccggaagaggtctaaatgataaaacaaaattaaaactaca 46920916  T
Q  338 atatcaagcaagcaactttgagagcattatatcattcagaaggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataag 437  Q
    || ||||||||    |||  ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||||     
T  46920915 atctcaagcaa----cttcaagagcatcatatcattcagaaggaatgatgcatttgaagagagcaagaaatccaagactttagagcatccgataaataaa 46920820  T
Q  438 caccatacttaacaagtcaatccgtacgctcgttgttgccttgacagaaggtatgatgaaaattaacaatccaattttgatgttgtcggaaggggtctct 537  Q
    |||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46920819 caccatacttaacaagccaatccgtacactcgttgttgccttgacggaaggtatgataaaaattaacaatccaattttgatgttgtcggaaggggtctct 46920720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 379 - 522
Target Start/End: Complemental strand, 38024812 - 38024672
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    ||||||||||| |||| ||| ||||  ||||||||||||| |||||||||| ||| ||||| ||| |||| |||||||||||| || |||   |||||||    
T  38024812 ggaatgatgcagttgaggagagcaaacaatccaaaactttggagcatctgaagaagaagcatcatgcttagcaagtcaatccgcacactc---gttgcct 38024716  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    |||| || |||||||||||||||||||||||||| | |||||||    
T  38024715 tgacggagggtatgatgaaaattaacaatccaatctcgatgttg 38024672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 522
Target Start/End: Original strand, 5952805 - 5952928
Alignment:
Q  396 gagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgccttgacagaaggtatgatg 495  Q
    |||||||  |||||||| ||||||||||||  || ||| ||||||||| |||| |||| ||||| | || |||   ||| |||||||  | |||||| ||    
T  5952805 gagggcagaaaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatctgcacactc---gttaccttgacgaagggtatgctg 5952901  T
Q  496 aaaattaacaatccaattttgatgttg 522  Q
    ||||| ||||||||||| | |||||||    
T  5952902 aaaatgaacaatccaatctcgatgttg 5952928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 368 - 522
Target Start/End: Complemental strand, 7022997 - 7022845
Alignment:
Q  368 atcattcagaaggaa-tgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgc 466  Q
    ||||||||||||||| ||||||| |||| ||||||||  ||||||| ||||||||||||| || ||| ||||||||| |||| |||||||||||| || |    
T  7022997 atcattcagaaggaaatgatgcagttgaggagggcaaacaatccaatactttagagcatccgaagaagaagcaccatgcttagcaagtcaatccgcacac 7022898  T
Q  467 tcgttgttgccttgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    ||   ||||||||||| || |||||||||||||||||||||||||| | |||||||    
T  7022897 tc---gttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttg 7022845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 522
Target Start/End: Complemental strand, 34252487 - 34252335
Alignment:
Q  368 atcattcagaagg-aatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgc 466  Q
    ||||||||||||| ||||||||| |||| ||||||||  ||||||| ||||||||||||| || ||| ||||||||| |||| |||| ||||||| || |    
T  34252487 atcattcagaagggaatgatgcagttgaggagggcaaacaatccaagactttagagcatccgaagaagaagcaccatgcttagcaagccaatccgcacac 34252388  T
Q  467 tcgttgttgccttgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
     |   ||||||||||| || |||||||||||||||||||||||||| | |||||||    
T  34252387 cc---gttgccttgacggagggtatgatgaaaattaacaatccaatctcgatgttg 34252335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 522
Target Start/End: Original strand, 26292184 - 26292324
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    ||||||||||| |||| ||||||||  ||||||| | ||||||||||| || ||| |||||  || |||| |||| |||||||||| |   |||||||||    
T  26292184 ggaatgatgcagttgaggagggcaaacaatccaagagtttagagcatccgaagaagaagcattatgcttagcaagccaatccgtacac---ttgttgcct 26292280  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    |||| || ||| || ||||||||||||||||||| | |||||||    
T  26292281 tgacggagggtctgttgaaaattaacaatccaatatcgatgttg 26292324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 32286182 - 32286100
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccg 461  Q
    ||||||||||| |||| ||||||||  ||||||||| ||||||||||| || ||| ||||| ||| |||||||||||||||||    
T  32286182 ggaatgatgcagttgaggagggcaaacaatccaaaattttagagcatccgaagaagaagcatcattcttaacaagtcaatccg 32286100  T

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Target: chr2 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 379 - 522
Target Start/End: Original strand, 9388771 - 9388911
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    ||||||||||| |||| |||  |||  ||||||||||||||||||||| || ||| |||||||||||||| |||| ||||| | || |||  |||   ||    
T  9388771 ggaatgatgcagttgaggagcacaaacaatccaaaactttagagcatccgaagaagaagcaccatacttagcaagccaatctgcacactcaatgt---ct 9388867  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    ||||||| |||||||||||||||||||||||||| | |||||||    
T  9388868 tgacagagggtatgatgaaaattaacaatccaatctcgatgttg 9388911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 512
Target Start/End: Original strand, 9992824 - 9992953
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    ||||||||||| |||| ||||||||   || ||| | ||||||||||| || ||| ||||||||| ||||  | | ||||||| || |||||||   |||    
T  9992824 ggaatgatgcagttgaggagggcaaacgattcaagattttagagcatccgaagaagaagcaccatgcttagta-gccaatccgcacactcgttg---cct 9992919  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaat 512  Q
    ||||  | ||||||||||||||||||||||||||    
T  9992920 tgacgaagggtatgatgaaaattaacaatccaat 9992953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 368 - 522
Target Start/End: Complemental strand, 5171437 - 5171285
Alignment:
Q  368 atcattcagaagg-aatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgc 466  Q
    ||||||||||||| ||||||||| |||| ||||||||  ||||||| ||||||||| ||| || ||| ||||||||| |||| |||| ||||||| || |    
T  5171437 atcattcagaagggaatgatgcagttgaggagggcaaacaatccaagactttagagtatccgaagaagaagcaccatgcttagcaagccaatccgcacac 5171338  T
Q  467 tcgttgttgccttgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    ||   ||||||||||| || ||||| ||||||||||||||| |||| | |||||||    
T  5171337 tc---gttgccttgacggagggtataatgaaaattaacaattcaatctcgatgttg 5171285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 522
Target Start/End: Original strand, 19816242 - 19816382
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    |||| |||||| |||| |||||||| |||||||| |||||||| |||| || ||| ||||||||| |||| |||| ||||||| || ||||||    |||    
T  19816242 ggaacgatgcagttgaggagggcaaaaaatccaagactttagatcatccgaagaagaagcaccatgcttagcaagccaatccgcacactcgtta---cct 19816338  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    |||| ||  ||||||||||||| ||||||||||| |||||||||    
T  19816339 tgacggagagtatgatgaaaatgaacaatccaatcttgatgttg 19816382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 522
Target Start/End: Complemental strand, 21375199 - 21375059
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    ||||| ||||| || | ||||||||  ||||||| ||||||||||||  || ||| ||||||||| |||| |||| ||||||| || |||||||   |||    
T  21375199 ggaataatgcagtttaggagggcaaacaatccaagactttagagcattcgaagaagaagcaccatgcttagcaagccaatccgcacactcgttg---cct 21375103  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    |||  ||||||||||||||||||||||||| ||| | |||||||    
T  21375102 tgatggaaggtatgatgaaaattaacaatctaatctcgatgttg 21375059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 377 - 522
Target Start/End: Complemental strand, 1804701 - 1804557
Alignment:
Q  377 aaggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgc 476  Q
    ||||||||||| | |||| |||| |||  ||||||| ||||||||| ||| || ||| ||||||||| |||| |||||||||| | || |||   ||| |    
T  1804701 aaggaatgatgtaattgaggaggacaaacaatccaagactttagagtatccgaagaagaagcaccatgcttagcaagtcaatctgcacactc---gttac 1804605  T
Q  477 cttgacagaag--gtatgatgaaaattaacaatccaattttgatgttg 522  Q
    |||||| || |  ||||||||||||||||||||||||| | |||||||    
T  1804604 cttgacggaggctgtatgatgaaaattaacaatccaatatcgatgttg 1804557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 391 - 521
Target Start/End: Original strand, 8567517 - 8567644
Alignment:
Q  391 ttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgccttgacagaaggta 490  Q
    ||||||||||||| |||||||| ||||||||||||| || ||| ||||| | |||||| |||||||||| | || |||   |||||||| ||||| ||||    
T  8567517 ttgaagagggcaaaaaatccaagactttagagcatccgaagaagaagcatcgtacttagcaagtcaatctgcacactc---gttgccttaacagagggta 8567613  T
Q  491 tgatgaaaattaacaatccaattttgatgtt 521  Q
    ||||||||||||| ||| |||| | ||||||    
T  8567614 tgatgaaaattaataattcaatctcgatgtt 8567644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 523
Target Start/End: Original strand, 29018508 - 29018651
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    ||||||||||| |||| |||||||| || ||||| | |||||||||| ||| ||| ||||||||| |||  |||| ||||||| || | | | |||||||    
T  29018508 ggaatgatgcagttgaggagggcaaaaactccaagattttagagcatatgaagaagaagcaccatgctttgcaagccaatccgcacacac-tcgttgcct 29018606  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttgt 523  Q
    |||| || || ||| |||||||| |||||||||| | ||||||||    
T  29018607 tgacggatggaatgttgaaaattgacaatccaatctcgatgttgt 29018651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 522
Target Start/End: Original strand, 55428858 - 55428998
Alignment:
Q  379 ggaatgatgcatttgaagagggcaagaaatccaaaactttagagcatctgatgaataagcaccatacttaacaagtcaatccgtacgctcgttgttgcct 478  Q
    |||| |||||| |||| | |||||| |||||||| |||||| ||||||  |  || ||||||||| |||| |||| ||||||| || ||||||    |||    
T  55428858 ggaacgatgcagttgaggggggcaaaaaatccaagactttaaagcatccaaataagaagcaccatgcttagcaagccaatccgcacactcgtta---cct 55428954  T
Q  479 tgacagaaggtatgatgaaaattaacaatccaattttgatgttg 522  Q
    |||| || |||||||||||||| ||||||||||| | |||||||    
T  55428955 tgacggagggtatgatgaaaatgaacaatccaatctagatgttg 55428998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 523
Target Start/End: Complemental strand, 28175359 - 28175308
Alignment:
Q  472 gttgccttgacagaaggtatgatgaaaattaacaatccaattttgatgttgt 523  Q
    ||||||||||| || ||||||||||||||||||| |||||| | ||||||||    
T  28175359 gttgccttgacggagggtatgatgaaaattaacattccaatctcgatgttgt 28175308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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