View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7465_low_4 (Length: 441)

Name: NF7465_low_4
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7465_low_4
NF7465_low_4
[»] chr4 (7 HSPs)
chr4 (19-176)||(6767326-6767488)
chr4 (242-345)||(6767156-6767259)
chr4 (242-311)||(48509854-48509924)
chr4 (243-311)||(55430291-55430360)
chr4 (121-171)||(51347329-51347379)
chr4 (121-170)||(9220169-9220218)
chr4 (122-170)||(26933899-26933947)
[»] chr1 (5 HSPs)
chr1 (242-300)||(1859277-1859336)
chr1 (96-175)||(1859134-1859213)
chr1 (242-300)||(8973443-8973502)
chr1 (121-170)||(32168436-32168485)
chr1 (242-300)||(45230704-45230763)
[»] chr6 (4 HSPs)
chr6 (96-170)||(32251079-32251152)
chr6 (121-155)||(24356197-24356231)
chr6 (121-170)||(17251384-17251433)
chr6 (122-170)||(1249604-1249652)
[»] chr7 (5 HSPs)
chr7 (121-170)||(30586806-30586855)
chr7 (244-300)||(46715309-46715366)
chr7 (121-171)||(24283646-24283696)
chr7 (121-170)||(42841996-42842045)
chr7 (121-170)||(46715432-46715481)
[»] chr2 (4 HSPs)
chr2 (121-170)||(13849845-13849894)
chr2 (244-311)||(25787516-25787584)
chr2 (243-306)||(3041748-3041811)
chr2 (121-170)||(13754019-13754068)
[»] chr3 (4 HSPs)
chr3 (122-170)||(3643329-3643377)
chr3 (242-311)||(26748539-26748609)
chr3 (242-311)||(34750841-34750911)
chr3 (121-171)||(43159892-43159942)
[»] scaffold0009 (1 HSPs)
scaffold0009 (121-155)||(147271-147305)
[»] chr5 (2 HSPs)
chr5 (121-171)||(37306822-37306872)
chr5 (122-170)||(25027848-25027896)
[»] scaffold0135 (1 HSPs)
scaffold0135 (121-170)||(30820-30869)
[»] chr8 (2 HSPs)
chr8 (121-166)||(42352803-42352847)
chr8 (122-170)||(12763499-12763547)


Alignment Details
Target: chr4 (Bit Score: 111; Significance: 7e-56; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 6767488 - 6767326
Alignment:
Q  19 agaatttaacttctagtttacttttctagacattatatctaacgcgaaaaataggagatcaaaaattttgtttttaa-----tgtcattttcaaagtcta 113  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||     ||||||||| ||||||||    
T  6767488 agaatttaacttctagtttacttttctagacattatatctaaagcgaaaaatataagatcaaaaattttgtttttaattaactgtcatttttaaagtcta 6767389  T
Q  114 taaccttattaaatgttgttttatctatattacccttagatagtcattgcagagagaagtatg 176  Q
    |||||| ||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  6767388 taacctcattaaattttgttttatctatattacctttagatagtcatcgcagagagaagtatg 6767326  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 6767259 - 6767156
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaagtt-aaatgtgacaatttaaaaggaaaagatggagtaggaaaaatgtcaaattatagatgtagagt 340  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6767259 gtaaaagtatttgctgtcttgatttatgtataaagttaaaatgtgataatttaaaaggaaaagatggaatagg-aaaatgtcaaattatagatgtagagt 6767161  T
Q  341 ctgtg 345  Q
    |||||    
T  6767160 ctgtg 6767156  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 48509924 - 48509854
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaaaagatggagta 311  Q
    |||||| ||||||||||||||||||||||| |||||  ||||||||||||| |||||||| ||| ||||||    
T  48509924 gtaaaaatatttgttgtcttgatttatgtaaaaagtcaaaatgtgacaattaaaaaggaatagagggagta 48509854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 311
Target Start/End: Complemental strand, 55430360 - 55430291
Alignment:
Q  243 taaaagtatttgttgtcttgatttatgtataaagttaaa-tgtgacaatttaaaaggaaaagatggagta 311  Q
    |||||||||||||| ||||| ||| |||| ||||| ||| |||||||||| |||||||||||| ||||||    
T  55430360 taaaagtatttgttatcttggtttgtgtaaaaagtaaaaatgtgacaattaaaaaggaaaagagggagta 55430291  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 51347329 - 51347379
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagagaa 171  Q
    |||||||||||||||| | |||||||||||||||| | ||||| |||||||    
T  51347329 attaaatgttgttttaccaatattacccttagatatttattgcggagagaa 51347379  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 9220218 - 9220169
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||| ||||||| | |||||||||||||||| | ||||||||||||    
T  9220218 attaaatgatgttttaccaatattacccttagatatttattgcagagaga 9220169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 26933947 - 26933899
Alignment:
Q  122 ttaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    ||||||||||||||||| ||||||||||||| || | || |||||||||    
T  26933947 ttaaatgttgttttatcaatattacccttagttatttatcgcagagaga 26933899  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 1859277 - 1859336
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaagtt-aaatgtgacaatttaaaaggaa 300  Q
    |||||||||||||||||||||||||||||| |||||| |||||||| |||| ||||||||    
T  1859277 gtaaaagtatttgttgtcttgatttatgtaaaaagttaaaatgtgataattaaaaaggaa 1859336  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 175
Target Start/End: Original strand, 1859134 - 1859213
Alignment:
Q  96 tgtcattttcaaagtctataaccttattaaatgttgttttatctatattacccttagatagtcattgcagagagaagtat 175  Q
    ||||||||||||||| ||  || | |||||||||||||||| |||||||||||||| ||| | |||  ||||||||||||    
T  1859134 tgtcattttcaaagtttaatacatcattaaatgttgttttacctatattacccttatatatttattatagagagaagtat 1859213  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 300
Target Start/End: Complemental strand, 8973502 - 8973443
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaa 300  Q
    |||||||||||||||||||||||||||||| |||||  |||| |||||||| ||||||||    
T  8973502 gtaaaagtatttgttgtcttgatttatgtaaaaagtcaaaatatgacaattaaaaaggaa 8973443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 32168485 - 32168436
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||||||||||||| |||||||||||||||| | ||||| ||||||    
T  32168485 attaaatgttgttttatcaatattacccttagatatttattgcggagaga 32168436  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 45230704 - 45230763
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaa 300  Q
    ||||||||||||||||||||| |||||||| |||||  |||||| |||||| ||||||||    
T  45230704 gtaaaagtatttgttgtcttggtttatgtaaaaagtcaaaatgtaacaattaaaaaggaa 45230763  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 32251152 - 32251079
Alignment:
Q  96 tgtcattttcaaagtctataaccttattaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||| ||||||||||| |  || | |||||||||||||||| |||||||||||||||||| | ||||||||||||    
T  32251152 tgtcgttttcaaagtccaatacatcattaaatgttgttttacctatattacccttagata-ttattgcagagaga 32251079  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 24356231 - 24356197
Alignment:
Q  121 attaaatgttgttttatctatattacccttagata 155  Q
    |||||||||||||||||| ||||||||||||||||    
T  24356231 attaaatgttgttttatcaatattacccttagata 24356197  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 17251433 - 17251384
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||||||||||| | |||||||||||||||| | |||||| |||||    
T  17251433 attaaatgttgttttaccaatattacccttagatatttattgcaaagaga 17251384  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 1249604 - 1249652
Alignment:
Q  122 ttaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    ||||||||||||||||| ||||||||||||| || | ||||| ||||||    
T  1249604 ttaaatgttgttttatcaatattacccttagttatttattgcggagaga 1249652  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 30586855 - 30586806
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    ||||||||||| ||||||||||||||||||||||| | | ||||||||||    
T  30586855 attaaatgttgatttatctatattacccttagatatttactgcagagaga 30586806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 46715366 - 46715309
Alignment:
Q  244 aaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaa 300  Q
    ||||||||||||||||||||||| |||| |||||  ||||||||||||| ||||||||    
T  46715366 aaaagtatttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaaggaa 46715309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 24283646 - 24283696
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagagaa 171  Q
    |||||||| ||||||||| |||||||||||||||| | ||||| |||||||    
T  24283646 attaaatgatgttttatcaatattacccttagatatttattgcggagagaa 24283696  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 42842045 - 42841996
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||||| ||||||| |||||||||||||||| | ||||| ||||||    
T  42842045 attaaatgttattttatcaatattacccttagatatttattgcggagaga 42841996  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 46715481 - 46715432
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    ||||||||| ||||||||||||||||||||| ||| | ||||| ||||||    
T  46715481 attaaatgtggttttatctatattacccttatatatttattgctgagaga 46715432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 13849894 - 13849845
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||||||||||||| |||||||| ||||||| | ||||||||||||    
T  13849894 attaaatgttgttttatcaatattacctttagatatttattgcagagaga 13849845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 25787516 - 25787584
Alignment:
Q  244 aaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaaaagatggagta 311  Q
    ||||||||||||||||||| ||| |||| |||||  ||||||||||||| |||||||| ||| ||||||    
T  25787516 aaaagtatttgttgtcttggtttgtgtaaaaagtcaaaatgtgacaattaaaaaggaacagagggagta 25787584  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 3041748 - 3041811
Alignment:
Q  243 taaaagtatttgttgtcttgatttatgtataaagttaaatgtgacaatttaaaaggaaaagatg 306  Q
    |||||||||||||||||||| ||| |||| ||||| |||||| |||||| ||||| || |||||    
T  3041748 taaaagtatttgttgtcttggtttgtgtaaaaagtcaaatgtaacaattaaaaagtaacagatg 3041811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Original strand, 13754019 - 13754068
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||||||||||||| ||||||||||||| || | ||||| ||||||    
T  13754019 attaaatgttgttttatcaatattacccttagttatttattgcggagaga 13754068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 3643377 - 3643329
Alignment:
Q  122 ttaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    ||||||||||||||||| |||||||||||||||| | ||||| ||||||    
T  3643377 ttaaatgttgttttatcaatattacccttagatatttattgcggagaga 3643329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 26748539 - 26748609
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaagt-taaatgtgacaatttaaaaggaaaagatggagta 311  Q
    ||||||| ||||||||||||||||| |||| |||||  ||||||||||||| |||||| | ||| ||||||    
T  26748539 gtaaaagcatttgttgtcttgatttgtgtaaaaagtcaaaatgtgacaattaaaaagggacagagggagta 26748609  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 34750841 - 34750911
Alignment:
Q  242 gtaaaagtatttgttgtcttgatttatgtataaag-ttaaatgtgacaatttaaaaggaaaagatggagta 311  Q
    ||||||||||||||||||||||||| |||| ||||   ||||| ||||||| |||||||| ||| ||||||    
T  34750841 gtaaaagtatttgttgtcttgatttgtgtaaaaagacaaaatgagacaattaaaaaggaatagagggagta 34750911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 43159942 - 43159892
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagagaa 171  Q
    ||||||||||| |||||| |||||||||||| ||| | |||||||||||||    
T  43159942 attaaatgttgatttatcaatattacccttaaatatttattgcagagagaa 43159892  T

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Target: scaffold0009 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 147305 - 147271
Alignment:
Q  121 attaaatgttgttttatctatattacccttagata 155  Q
    |||||||||||||||||| ||||||||||||||||    
T  147305 attaaatgttgttttatcaatattacccttagata 147271  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 37306872 - 37306822
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagagaa 171  Q
    |||||||| ||||||| | |||||||||||||||| | |||||||||||||    
T  37306872 attaaatgatgttttaccaatattacccttagatatttattgcagagagaa 37306822  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 25027896 - 25027848
Alignment:
Q  122 ttaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    ||||||||||||||||| ||||||||||||| || | ||||| ||||||    
T  25027896 ttaaatgttgttttatcaatattacccttagttatttattgcggagaga 25027848  T

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Target: scaffold0135 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 30869 - 30820
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
    |||||||| ||||||| | |||||||||||||||| | ||||||||||||    
T  30869 attaaatgatgttttaccaatattacccttagatatttattgcagagaga 30820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 166
Target Start/End: Original strand, 42352803 - 42352847
Alignment:
Q  121 attaaatgttgttttatctatattacccttagatagtcattgcaga 166  Q
    |||||||||||||||| |||||||||||||||||| | ||||||||    
T  42352803 attaaatgttgtttta-ctatattacccttagatatttattgcaga 42352847  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 12763499 - 12763547
Alignment:
Q  122 ttaaatgttgttttatctatattacccttagatagtcattgcagagaga 170  Q
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T  12763499 ttaaatgttgttttatcaatattacccttagttatttattgcggagaga 12763547  T

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