View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_5 (Length: 405)
Name: NF7465_low_5
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 37267548 - 37267934
Alignment:
| Q |
9 |
gaagaatatgaggtaagtggggtacaaaattcaacttccaacatactggacaagtggggac------gtggacgtgtagcagaaaacataggtgttggat |
102 |
Q |
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| T |
37267548 |
gaagaatatgaggtaagtggggtacaaaattcaacttccaacatactggacaagtggggacgtggacgtggacgtgtagcagaaaacataggtgttggat |
37267647 |
T |
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| Q |
103 |
gtatgaaaaaacttcaacttccatcgtgaaaaggtttcaccatatagtaggtgattaacttatgtagggaaaattatttgccaataaaatatggtataaa |
202 |
Q |
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| T |
37267648 |
gtatgaaaaaacttcaacttccatcgtgaaaaggtttcaccatatagtaggtgattaacttatgtagggaaaattatttgccaataaaatatggtataaa |
37267747 |
T |
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| Q |
203 |
tatgtcttcatttcagtcacnnnnnnnnttataaacgttttcaattcatgcaaatacattatttctttaagggaaaatagacattctttcttttatttga |
302 |
Q |
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| T |
37267748 |
tatatcttcatttcagtcacaaaaaaaattataaacgttttcaattcatgcacatacattatttctttaagggaaaatagacattctttcttttatttga |
37267847 |
T |
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| Q |
303 |
ccccttttgaattttatcttgaaatgacccattttttagggtaaatgctgtgtaataaggaaaaacacgcgattaaaagttaaaact |
389 |
Q |
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| T |
37267848 |
ccccttttgaattttatcttgaaatgacccattttttagggtaaatgctgtgtaataaggaaaaacacgagattaaaagttaaaact |
37267934 |
T |
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