View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_6 (Length: 341)
Name: NF7465_low_6
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 17455027 - 17455239
Alignment:
| Q |
1 |
aactttgtattacatgtatccattttatggaatgcttgcatgaaaaaaggaatagttatatgcatttacaactactcaaatctgtattcttagcactacg |
100 |
Q |
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| T |
17455027 |
aactttgtattacatgtatccattttagggaatgcttgcatgaaaaaaggattagttatatgcatttacaactactcaaatctgtattcttagcactacg |
17455126 |
T |
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| Q |
101 |
cattagatcaaacaaatagaccctcaatcagaacaaaagacatccaagaacagcattgttgaactctccatcacttgatcttggtcatcagtccatgtaa |
200 |
Q |
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| T |
17455127 |
cattagatcaaacaaatagaccctcaatcagaacaaaagacatccaagaacagcattgttgaactctccatcacttgatcttggtcatcagtccatgtaa |
17455226 |
T |
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| Q |
201 |
ccttgggcagatt |
213 |
Q |
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| T |
17455227 |
ccttgggcagatt |
17455239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 17455390 - 17455523
Alignment:
| Q |
208 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaa |
307 |
Q |
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| T |
17455390 |
cagatttcatctctgatttatttttcgccgtgtccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaa |
17455489 |
T |
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| Q |
308 |
ttcaaatgacaagaatatggggacagtcagtgcc |
341 |
Q |
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| T |
17455490 |
ttcaaatgacaagaatatggggacagtcagtgcc |
17455523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 341
Target Start/End: Complemental strand, 17461704 - 17461501
Alignment:
| Q |
145 |
caagaacagcattgttgaactctccatcacttgatcttggtcatcagt----ccatgtaaccttgggcagatttcatctctgatttatttttcgccgtg- |
239 |
Q |
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| T |
17461704 |
caagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaaaggttttagctctgatctatttttctccttaa |
17461605 |
T |
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| Q |
240 |
--tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcag |
337 |
Q |
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| T |
17461604 |
cttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcag |
17461505 |
T |
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| Q |
338 |
tgcc |
341 |
Q |
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|||| |
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| T |
17461504 |
tgcc |
17461501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 17461886 - 17461737
Alignment:
| Q |
10 |
ttacatgtatccattttatggaatgcttgcatgaaaaaagga----------atagttatatgcatttacaa------ctactcaaatctgtattcttag |
93 |
Q |
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| T |
17461886 |
ttacaagtatccattttatggaatgcttgcatgagaaaagaaaatgagtaatatactaatatgcatttacaactccacctactcaaatttgtatacttaa |
17461787 |
T |
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| Q |
94 |
cactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
143 |
Q |
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| T |
17461786 |
cactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
17461737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 240 - 341
Target Start/End: Complemental strand, 52143035 - 52142934
Alignment:
| Q |
240 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg |
339 |
Q |
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| T |
52143035 |
tccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagtg |
52142936 |
T |
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| Q |
340 |
cc |
341 |
Q |
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|| |
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| T |
52142935 |
cc |
52142934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 774795 - 774843
Alignment:
| Q |
1 |
aactttgtattacatgtatccattttatggaatgcttgcatgaaaaaag |
49 |
Q |
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| T |
774795 |
aactttgttttacaagtatccattttagggaatgcttgcatgaaaaaag |
774843 |
T |
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