View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7465_low_8 (Length: 328)
Name: NF7465_low_8
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 17455514 - 17455808
Alignment:
| Q |
1 |
agtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccataca |
100 |
Q |
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| T |
17455514 |
agtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccataca |
17455613 |
T |
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| Q |
101 |
ttgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaactagtggtcaaagataca |
200 |
Q |
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| T |
17455614 |
ttgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaactagtggtcaaagataca |
17455713 |
T |
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| Q |
201 |
gacattaaagttacccaagtcagtttgtttatttatatacaagtcatttttatggtgagtataaagacaaataatatagtacctatctcgactct |
295 |
Q |
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| T |
17455714 |
gacattaaagttaccttagtcagtttgtttatttatatacaagtcatttttacggtgagtataaagacaaataatatagtacctatctcgactct |
17455808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 17461510 - 17461338
Alignment:
| Q |
1 |
agtcagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccataca |
100 |
Q |
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| T |
17461510 |
agtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagcgccaccataca |
17461411 |
T |
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| Q |
101 |
ttgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaa |
173 |
Q |
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| T |
17461410 |
ttgtttgctttcttagctttttttgagagttccctgtaaaaggttgaaatcaacaatgtgaaagaaaagtgaa |
17461338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 774866 - 774964
Alignment:
| Q |
87 |
agtgccaccatacattgtttgctttcttagcttttcttgagaattccctgcaaaacattgaagtcgaaaatgtgaaagaaaagtgaagtgcataaacta |
185 |
Q |
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| T |
774866 |
agtgccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaacta |
774964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 775196 - 775245
Alignment:
| Q |
183 |
ctagtggtcaaagatacagacattaaagttacccaagtcagtttgtttat |
232 |
Q |
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| T |
775196 |
ctagtggtcaaagatacaaacattaaagttacaaaagtcagtttgattat |
775245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 52142940 - 52142793
Alignment:
| Q |
4 |
cagtgccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattg |
103 |
Q |
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||||||||| ||| ||||||||||||| ||||| |||| |||||||| |||| ||||||||||||||||| | |||||||| | ||||||||| |||| |
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| T |
52142940 |
cagtgccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattg |
52142841 |
T |
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| Q |
104 |
tttgctttcttagcttttcttgagaattccctgcaaaacattgaagtc |
151 |
Q |
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| T |
52142840 |
tttgctttcttagctttttttgagagttccctgtgaaagattgaagtc |
52142793 |
T |
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