View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7465_low_9 (Length: 308)
Name: NF7465_low_9
Description: NF7465
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7465_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2040287 - 2040575
Alignment:
| Q |
1 |
tccaagatgcagcaaccacttctttttcatgaatattgagtaaaatggtggggatttagggttgcaattgttggacttgggttatgtaagtttaatatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
2040287 |
tccaagatgcagcaaccacttctttttcatgaatattgagtaaaatggtggggatttagggttgcaattgttggactttggttatgtaagttaaatatag |
2040386 |
T |
|
| Q |
101 |
aatgctataaaaactgaaataggttgcacatagaaaatgcaaaaatcacatttttgtcgtcattcaaaattaagaagcgttatagactctgggaaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
2040387 |
aatgctataaaaactgaaataggttgcacatagaaaatgcaaaaatcacattgttgtcgtcattcaaaattaagaagcgttacaaactctgggaaaatat |
2040486 |
T |
|
| Q |
201 |
gataattatgtatcggtcttgtgtgttggaaggtgaaaaaatcacattgctactatgctactcaaacatttggtatacaaggtagcata |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2040487 |
gataattatgtatcggtcttgtgtgttggaaggtgaaaaaatcatattgctactatgctactcaaacatttggtatacaaagtagcata |
2040575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University