View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7466_high_4 (Length: 304)
Name: NF7466_high_4
Description: NF7466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7466_high_4 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 304
Target Start/End: Original strand, 47197965 - 47198250
Alignment:
| Q |
19 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattga |
118 |
Q |
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| T |
47197965 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattga |
47198064 |
T |
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| Q |
119 |
tcattgccatctgtatgcaggtcactactcaataattataatagcattaattattaataatgaatcattttaatgcataatgcagccgaatcaatgttaa |
218 |
Q |
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| T |
47198065 |
tcattgccatctgtatgcaggtcactactcaataactataatagcattaattattaatcatgaatcattttaatgcataatgcagtcgaatcaatgttaa |
47198164 |
T |
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| Q |
219 |
aatattaaaccaaatacatgaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgtt |
304 |
Q |
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| T |
47198165 |
aatattaaaccaaatacataaatttttattatgtttaattatgtacaggtcttccagcaatgcaccggcatcaatgcaatcatgtt |
47198250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 47185083 - 47185211
Alignment:
| Q |
19 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggttaagagtcccttcaaggatctcgttaagtcccacaatcgtcctccattga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| ||||| |||| |
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| T |
47185083 |
gagcccgagtttgaagacatactcagagctagtaaagtggctaatgaggtcaagagccccttcaaggatcttgttaagtcccacaatctccctcctttga |
47185182 |
T |
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| Q |
119 |
tcattgccatctgtatgcaggtcactact |
147 |
Q |
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| T |
47185183 |
taattgccatatgtatgcaggtaactact |
47185211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 47185672 - 47185711
Alignment:
| Q |
265 |
aggtcttccagcaatgcaccggcatcaatgcaatcatgtt |
304 |
Q |
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| T |
47185672 |
aggtcttccaacaattcaccggcatcaatgcaatcatgtt |
47185711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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