View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7466_low_1 (Length: 467)
Name: NF7466_low_1
Description: NF7466
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7466_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 43092790 - 43092343
Alignment:
| Q |
1 |
ttctagccaaacaccctggcttctccaccttcaaccactacctcaccataacccacctcgccgacgaaatcaaccgccgtcaaaccataaccatcctagc |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43092790 |
ttctagccaaacaccctggcttctccaccttcaaccactacctcaccataacccacctcgccgacgaaatcaaccgccgtcaaaccataaccatcctagc |
43092691 |
T |
|
| Q |
101 |
catagacaatgccgccatgtcctccctcctagacaaacacctctccatcaccaccctcaaaaatgtcctctccctccatgttttagtcgactacttcggc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43092690 |
catagacaatgccgccatgtcctccctcctagacaaacacctctccatcaccaccctcaaaaatgtcctctccctccatgttttagtcgactacttcggc |
43092591 |
T |
|
| Q |
201 |
gccaagaaactccaccaaatcaccgacggcaccacacttgtctcctccatgttccaagccaccggatccgccgctggaaccgccggttacgtgaatatca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43092590 |
gccaagaaactccaccaaatcaccgacggcaccacacttgtctcctccatgttccaagccactggatccgccgctggaaccgccggttacgtgaatatca |
43092491 |
T |
|
| Q |
301 |
caaacctaaaaggtggcaaagtcggttttggtgccgaagacaacgacggtctgcattcctactacgtaaaatccgtagaagaacttccatatgtcatctc |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43092490 |
caaacctaaaaggtggcaaagtcggttttggtgccgaagacaacgacggtctgcattcctactacgtaaaatccgtagaagaacttccatatgtcatctc |
43092391 |
T |
|
| Q |
401 |
cgttctccaaatcagtaatcctttaagctccgccgacgcagaagcgcc |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43092390 |
cgttctccaaatcagtaatcctttaagctccgccgacgcagaagcgcc |
43092343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 28869231 - 28869300
Alignment:
| Q |
1 |
ttctagccaaacaccctggcttctccaccttcaaccactacctcaccataacccacctcgccgacgaaat |
70 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
28869231 |
ttctagtcaaacaccctggcttctccaccttcaaccattacctcaccataacccacctcgtcgacgaaat |
28869300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23879360 - 23879417
Alignment:
| Q |
1 |
ttctagccaaacaccctggcttctccaccttcaaccactacctcaccataacccacct |
58 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
23879360 |
ttctcgccaaacaccctgaactctccaccttcaaccactacctatccctaacccacct |
23879417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 23879494 - 23879591
Alignment:
| Q |
135 |
aaacacctctccatcaccaccctcaaaaatgtcctctccctccatgttttagtcgactacttcggcgccaagaaactccaccaaatcaccgacggcac |
232 |
Q |
| |
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|||||||| || || | |||| ||||||| ||||||||||||| || | | ||||||||||||||||| || || |||||||||||| ||||||| |
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| T |
23879494 |
aaacacctttcaataaacaccatcaaaaacatcctctccctccacgtcctccttgactacttcggcgccaaaaagcttcaccaaatcaccaacggcac |
23879591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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