View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7467_high_3 (Length: 304)
Name: NF7467_high_3
Description: NF7467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7467_high_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 102 - 304
Target Start/End: Original strand, 54591999 - 54592201
Alignment:
| Q |
102 |
ttcaatcacttttattttcttaaattactaacaatgtttacatgttggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct |
201 |
Q |
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| T |
54591999 |
ttcaatcacttttattttctcaaattactaacaatgtttacatgtcggcgtccgtgccatgtatgtgtaaaatgtaaatgcttcataggttactaatgct |
54592098 |
T |
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| Q |
202 |
tgtttaaaaggaatttcacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact |
301 |
Q |
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| T |
54592099 |
tgtttaaaaggaattttacaatttcacttcaactagacaaaacaagtatctgaaattggggtggtcataatcagccaccactggtgctatacgttgaact |
54592198 |
T |
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| Q |
302 |
agt |
304 |
Q |
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||| |
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| T |
54592199 |
agt |
54592201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 54591380 - 54591453
Alignment:
| Q |
13 |
attttcttatcttcaaggttcctatcacatgtccaatgttcaacacgctttggtgttagaggccgacacaatac |
86 |
Q |
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| T |
54591380 |
attttcttatcttcaaggttcctatcacatgtccaatgttcaacacgctttggtgttagaggccgacacgatac |
54591453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 17105302 - 17105273
Alignment:
| Q |
99 |
acattcaatcacttttattttcttaaatta |
128 |
Q |
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| T |
17105302 |
acattcaatcacttttattttcttaaatta |
17105273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 10338649 - 10338605
Alignment:
| Q |
99 |
acattcaatcacttttattttcttaaattactaacaatgtttaca |
143 |
Q |
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| T |
10338649 |
acattcaatcacttctattttcttaaattattatcaatgtttaca |
10338605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 1960348 - 1960385
Alignment:
| Q |
99 |
acattcaatcacttttattttcttaaattactaacaat |
136 |
Q |
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| T |
1960348 |
acattcaatcactttcattttcttaaattactaccaat |
1960385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 3943811 - 3943761
Alignment:
| Q |
78 |
acacaatacaaacataccgtgacattcaatcacttttattttcttaaatta |
128 |
Q |
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||||||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
3943811 |
acacaatactaacatgtggttacattcaatcacttttattttcttaaatta |
3943761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 10440413 - 10440384
Alignment:
| Q |
99 |
acattcaatcacttttattttcttaaatta |
128 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10440413 |
acattcaatcacttttattttcttaaatta |
10440384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 8431282 - 8431310
Alignment:
| Q |
99 |
acattcaatcacttttattttcttaaatt |
127 |
Q |
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| T |
8431282 |
acattcaatcacttttattttcttaaatt |
8431310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 12170632 - 12170604
Alignment:
| Q |
100 |
cattcaatcacttttattttcttaaatta |
128 |
Q |
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| T |
12170632 |
cattcaatcacttttattttcttaaatta |
12170604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 12415060 - 12415032
Alignment:
| Q |
100 |
cattcaatcacttttattttcttaaatta |
128 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12415060 |
cattcaatcacttttattttcttaaatta |
12415032 |
T |
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