View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7467_low_2 (Length: 318)

Name: NF7467_low_2
Description: NF7467
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7467_low_2
NF7467_low_2
[»] chr5 (6 HSPs)
chr5 (17-308)||(29021532-29021823)
chr5 (28-304)||(28695564-28695840)
chr5 (60-304)||(28673346-28673590)
chr5 (151-247)||(28662717-28662815)
chr5 (87-143)||(28662057-28662113)
chr5 (227-282)||(28532571-28532626)
[»] chr8 (5 HSPs)
chr8 (63-279)||(18314714-18314929)
chr8 (151-279)||(18318807-18318935)
chr8 (56-111)||(18318712-18318767)
chr8 (165-279)||(32151732-32151846)
chr8 (78-114)||(32151897-32151933)
[»] chr4 (10 HSPs)
chr4 (20-284)||(8186392-8186656)
chr4 (145-276)||(532587-532718)
chr4 (69-114)||(2373556-2373601)
chr4 (69-126)||(12124509-12124566)
chr4 (69-111)||(2367990-2368032)
chr4 (69-111)||(5106641-5106683)
chr4 (72-113)||(2391349-2391390)
chr4 (69-111)||(2363162-2363204)
chr4 (69-111)||(2518912-2518954)
chr4 (84-128)||(6007324-6007368)
[»] chr3 (1 HSPs)
chr3 (183-282)||(13469872-13469968)
[»] chr6 (2 HSPs)
chr6 (165-284)||(9411886-9412005)
chr6 (15-103)||(6432773-6432861)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 29021823 - 29021532
Alignment:
Q  17 actactttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatc 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| ||||    
T  29021823 actactttgacctctctcacttgttaccaccttgaaaccctcaatagcactcatctctttcttattgctgattgcttccctttgctcgaagaactcgatc 29021724  T
Q  117 ttagttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcg 216  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  29021723 ttagttatcctgtaaagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgatctctctcg 29021624  T
Q  217 tcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgtcctagaataa 308  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  29021623 tcattgctatatcaacgaccaatcacttttccactttataaacaactgtaagcttctcgaagaagttattgtcattttttgtcctagaataa 29021532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 28 - 304
Target Start/End: Original strand, 28695564 - 28695840
Alignment:
Q  28 ctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcct 127  Q
    |||||||||||||| |||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||| ||||| ||||     
T  28695564 ctctctcacttgttcccaccttgcaactctccatagcactgatctcttcttcattgctgattgcttccctttgcccgaagaactcgatattagtgatccc 28695663  T
Q  128 gtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctata 227  Q
      |||| ||| ||| | ||||| ||||| ||||||| ||||||||||||||||| ||||||| |||||| ||||||||  |||||||||||||  ||| |    
T  28695664 agagagttcatctaccacagtagcttacacgatggtgtagaggctatttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactaca 28695763  T
Q  228 tcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagttactgtcatttcttgtcctaga 304  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||| ||||  ||| ||||||||| ||||    
T  28695764 tcaacggccaaccacttttccacttgataaacaactgcaagcttctcgaagaggttatagtcttttcttgtcataga 28695840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 60 - 304
Target Start/End: Original strand, 28673346 - 28673590
Alignment:
Q  60 atagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcga 159  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| | |||| ||| ||| | |||||  |||| |||    
T  28673346 atagcaccgatctcttcttcattgctgattgcttccctttgctcgaagaactcgatcttagtgatcccggagagttcatctaccacagtagtttacacga 28673445  T
Q  160 tggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaac 259  Q
    |||| | ||||||||||||||| ||||||| |||||| ||||||||  |||||||| ||||  ||| ||||||||||||||||||||||| |||||||||    
T  28673446 tggtgttgaggctatttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacgaccaatcacttttccatttgataaac 28673545  T
Q  260 aactgtaagcttctcgaagaagttactgtcatttcttgtcctaga 304  Q
    |||||||||||||||||||| ||||  ||| ||||||||| ||||    
T  28673546 aactgtaagcttctcgaagaggttatagtcttttcttgtcataga 28673590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 247
Target Start/End: Original strand, 28662717 - 28662815
Alignment:
Q  151 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggtt--gttctctctcgtcattgctatatcaacgaccaatcacttttc 247  Q
    |||||||||||||||||| |||||||||||||||||||| |||||| | ||||||    |||||||||||||   || |||||||||||||||||||||    
T  28662717 cttactcgatggtttagatgctatttcattgtcacttttcaaactctggaaggttaatctctctctcgtcatcaatacatcaacgaccaatcacttttc 28662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 28662057 - 28662113
Alignment:
Q  87 attgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatc 143  Q
    ||||||||||||||||||||||||| ||||||||| |||| | |||| |||||||||    
T  28662057 attgcttccctttgctcgaagaactcgatcttagtgatcccgaagagttcaactatc 28662113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 28532626 - 28532571
Alignment:
Q  227 atcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt 282  Q
    |||||| |||||||||||||||||||| | | |||||||||||||||| |||||||    
T  28532626 atcaacaaccaatcacttttccacttgttcagcaactgtaagcttctccaagaagt 28532571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 279
Target Start/End: Original strand, 18314714 - 18314929
Alignment:
Q  63 gcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcctgtagagatcaactatcgcagtaacttactcgatgg 162  Q
    ||||| |||||||| ||||||||||||| |||||||||||||||||||| || |||||||| ||   |||| | ||  |||     | ||||||| ||||    
T  18314714 gcactgatctcttcctcattgctgattgtttccctttgctcgaagaactcgaccttagttaccccaaagagttaaaaaatcatgaaagcttactcaatgg 18314813  T
Q  163 tttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaac 262  Q
      |||||| | ||||| |  ||||||| |||||||| ||||||  | || ||  ||||| ||| |||||||| ||||| |||||||||||| | || |||    
T  18314814 aatagaggttctttca-tcacacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaac 18314912  T
Q  263 tgtaagcttctcgaaga 279  Q
    |||||||||||||||||    
T  18314913 tgtaagcttctcgaaga 18314929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 279
Target Start/End: Original strand, 18318807 - 18318935
Alignment:
Q  151 cttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccac 250  Q
    ||||||||||||  |||||| | |||| ||  ||||||  |||||||| ||||||| |||| || |||||  |||||||| ||| ||||| ||| |||||    
T  18318807 cttactcgatggagtagaggttctttctttagcactttccaaactccgaaaggttgatctcactggtcatcactatatcaccgatcaatcgcttatccac 18318906  T
Q  251 ttgataaacaactgtaagcttctcgaaga 279  Q
    ||| | || ||||| ||||||||||||||    
T  18318907 ttgttcaagaactggaagcttctcgaaga 18318935  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 18318712 - 18318767
Alignment:
Q  56 ctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaagaact 111  Q
    |||||||||||| |||||||| ||||||| ||||| |||||||| || ||||||||    
T  18318712 ctcaatagcacttatctcttcctcattgcagattgtttccctttccttgaagaact 18318767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 279
Target Start/End: Complemental strand, 32151846 - 32151732
Alignment:
Q  165 tagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactg 264  Q
    |||||||| |||||  | |||||| ||||||| | ||||||  |||| |  |||||  |||||| || || ||||| |||||||||||| | ||||||||    
T  32151846 tagaggctctttcaacggcactttataaactctggaaggttaatctcacaagtcatcactatattaaagatcaatcgcttttccacttgttcaacaactg 32151747  T
Q  265 taagcttctcgaaga 279  Q
     ||||||||||||||    
T  32151746 gaagcttctcgaaga 32151732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 114
Target Start/End: Complemental strand, 32151933 - 32151897
Alignment:
Q  78 tcattgctgattgcttccctttgctcgaagaacttga 114  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  32151933 tcattgccgattgtttccctttgctcgaagaacttga 32151897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 8186392 - 8186656
Alignment:
Q  20 actttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctcgaagaacttgatctta 119  Q
    ||||||| ||| ||||| |||| | || ||||| |  ||||||||||| |  ||||| |||| || ||||| || ||||| || |||||||| ||||| |    
T  8186392 actttgacctcactcacatgttccaacattgaatctatcaatagcactgacatcttcctcatcgccgattgttttcctttcctagaagaactcgatctca 8186491  T
Q  120 gttatcctgtagagatcaactatcgcagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtca 219  Q
    || | |||  |||| ||||| ||| ||||| |||  | |||||  | |||||| |||||||| ||||||| ||||| |||||||||  ||| |||  |||    
T  8186492 gtaaccctaaagagttcaacaatctcagtatcttctttgatggagttgaggctctttcattggcacttttcaaacttcgcaaggttaatctatctaatca 8186591  T
Q  220 ttgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagtta 284  Q
    |  ||||||||||||| |||  ||||| |||||| |||| || ||||||| ||||||||| ||||    
T  8186592 taactatatcaacgacaaattgctttttcacttgttaaagaattgtaagcatctcgaagaggtta 8186656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 532718 - 532587
Alignment:
Q  145 cagtaacttactcgatggtttagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcactt 244  Q
    ||||| ||| ||| ||||| | ||| || ||||||| |||||||| |||||||||||||||  ||| |||  ||||  ||| |||||||||||||| |||    
T  532718 cagtagctttctccatggtgtggagactctttcattatcacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgctt 532619  T
Q  245 ttccacttgataaacaactgtaagcttctcga 276  Q
    ||||||||| | || || ||||||||||||||    
T  532618 ttccacttgttcaaaaattgtaagcttctcga 532587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 2373556 - 2373601
Alignment:
Q  69 atctcttcttcattgctgattgcttccctttgctcgaagaacttga 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  2373556 atctcttcttcattgctgattgtttccctttgctcgaagaacttga 2373601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 12124566 - 12124509
Alignment:
Q  69 atctcttcttcattgctgattgcttccctttgctcgaagaacttgatcttagttatcc 126  Q
    |||||||||||||||||||||| |||||||| || ||||||||||| || ||||||||    
T  12124566 atctcttcttcattgctgattgtttccctttactagaagaacttgacctcagttatcc 12124509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 2367990 - 2368032
Alignment:
Q  69 atctcttcttcattgctgattgcttccctttgctcgaagaact 111  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  2367990 atctcttcttcattgctgattgtttccctttactcgaagaact 2368032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 5106641 - 5106683
Alignment:
Q  69 atctcttcttcattgctgattgcttccctttgctcgaagaact 111  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  5106641 atctcttcttcattgctgattgtttccctttactcgaagaact 5106683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 2391349 - 2391390
Alignment:
Q  72 tcttcttcattgctgattgcttccctttgctcgaagaacttg 113  Q
    |||||||||||| ||||||||||||||| |||||||||||||    
T  2391349 tcttcttcattgttgattgcttccctttactcgaagaacttg 2391390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 2363162 - 2363204
Alignment:
Q  69 atctcttcttcattgctgattgcttccctttgctcgaagaact 111  Q
    |||||||||||||||||||||| |||||||| ||||| |||||    
T  2363162 atctcttcttcattgctgattgtttccctttcctcgacgaact 2363204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Complemental strand, 2518954 - 2518912
Alignment:
Q  69 atctcttcttcattgctgattgcttccctttgctcgaagaact 111  Q
    |||||||||||||||||||||| |||||||| ||| |||||||    
T  2518954 atctcttcttcattgctgattgtttccctttactcaaagaact 2518912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 6007368 - 6007324
Alignment:
Q  84 ctgattgcttccctttgctcgaagaacttgatcttagttatcctg 128  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||||    
T  6007368 ctgattgttttcctttactcgaagaacttgatcttagttaccctg 6007324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 282
Target Start/End: Original strand, 13469872 - 13469968
Alignment:
Q  183 cactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactgtaagcttctcgaagaagt 282  Q
    |||||||||||||||||||||||  ||| ||| ||  || |||||  ||| ||| |||||||||||||||  |  |||||||||||||||||||||||||    
T  13469872 cactttttaaactccgcaaggttaatctttctagtt-ttcctata--aacaacctatcacttttccacttattccacaactgtaagcttctcgaagaagt 13469968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 9412005 - 9411886
Alignment:
Q  165 tagaggctatttcattgtcactttttaaactccgcaaggttgttctctctcgtcattgctatatcaacgaccaatcacttttccacttgataaacaactg 264  Q
    ||||| || |||||||| ||||||| ||||||  |||| ||  ||||||| |||||  ||| |||||||||  |||||| ||| ||||| | || |||||    
T  9412005 tagagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaactg 9411906  T
Q  265 taagcttctcgaagaagtta 284  Q
    |||||||||| |||| ||||    
T  9411905 taagcttctccaagaggtta 9411886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 6432861 - 6432773
Alignment:
Q  15 tcactactttgatctctctcacttgttaccaccttgaaaccctcaatagcactcatctcttcttcattgctgattgcttccctttgctc 103  Q
    |||||||||||| |||||||| ||||| |||| || |  | || |||||| |||| |||||  ||||||| ||||| ||||||||||||    
T  6432861 tcactactttgacctctctcaattgttcccacattcattctcttaatagctctcacctcttactcattgccgattgtttccctttgctc 6432773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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