View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7468_low_4 (Length: 224)
Name: NF7468_low_4
Description: NF7468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7468_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 30951121 - 30951231
Alignment:
| Q |
1 |
tggattccttatcaacaagattcattttgtggctatccacaatttgagatcacttgcaagaacaacaatccaattctcaaaacctcaaattatgacctta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30951121 |
tggattccttatcaacaagattcattttgtggctatccacaatttgagatcacttgcaagaacaacaatccaattctcaaaacctcaaattatgatctta |
30951220 |
T |
|
| Q |
101 |
tagtaaaaact |
111 |
Q |
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||||||||||| |
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| T |
30951221 |
tagtaaaaact |
30951231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 31015462 - 31015570
Alignment:
| Q |
1 |
tggattccttatcaacaagattcattttgtggctatccacaatttgagatcacttgcaagaacaacaatccaattctcaaaacctcaaattatgacctta |
100 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
31015462 |
tggattccttttcaacaagactcattttgtggctatccacaatttgagatcacttgcatgaacaacaatccaattctcaaaacctcaaattatgacctat |
31015561 |
T |
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| Q |
101 |
tagtaaaaa |
109 |
Q |
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||||||||| |
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| T |
31015562 |
tagtaaaaa |
31015570 |
T |
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