View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7469_high_1 (Length: 519)

Name: NF7469_high_1
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7469_high_1
NF7469_high_1
[»] chr7 (3 HSPs)
chr7 (3-503)||(16566650-16567150)
chr7 (3-503)||(16598512-16599012)
chr7 (292-356)||(16491003-16491067)
[»] scaffold0078 (3 HSPs)
scaffold0078 (1-503)||(2994-3497)
scaffold0078 (73-503)||(22248-22678)
scaffold0078 (77-503)||(57537-57960)
[»] scaffold0184 (2 HSPs)
scaffold0184 (77-503)||(14884-15307)
scaffold0184 (176-393)||(1717-1934)
[»] scaffold0428 (1 HSPs)
scaffold0428 (388-430)||(1390-1432)
[»] chr6 (2 HSPs)
chr6 (388-430)||(8294441-8294483)
chr6 (388-430)||(33257272-33257314)
[»] chr8 (1 HSPs)
chr8 (382-467)||(560444-560529)
[»] chr1 (1 HSPs)
chr1 (401-473)||(5906149-5906221)


Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 3 - 503
Target Start/End: Complemental strand, 16567150 - 16566650
Alignment:
3 aaggaaacaaccaataaacacctaactagaaacatcaaaataacaaaaataaatatcaagagcaatattattttcctaaatcccaccaatcttctccaat 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
16567150 aaggaaacaaccaatagacacctaactagaaacatcaaaataacaaaaataaatattaagagcaatattattttcctaaatcccaccaatcttctccaat 16567051  T
103 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctcttaaactcttcattctatcacgcattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
16567050 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttggcattcaatgccatagcagcagcttctcttaaactcttcattctatcacgcattg 16566951  T
203 ccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccacttt 302  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16566950 ccatgccttcttccccttccataacagacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccacttt 16566851  T
303 aagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16566850 aagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattc 16566751  T
403 caaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaacataaaacctttttctttggttcttt 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
16566750 caaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaaaataaaacctttttctttggttcttt 16566651  T
503 c 503  Q
    |    
16566650 c 16566650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 3 - 503
Target Start/End: Original strand, 16598512 - 16599012
Alignment:
3 aaggaaacaaccaataaacacctaactagaaacatcaaaataacaaaaataaatatcaagagcaatattattttcctaaatcccaccaatcttctccaat 102  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
16598512 aaggaaacaaccaatagacacctaactagaaacatcaaaataacaaaaataaatattaagagcaatattattttcctaaatcccaccaatcttctccaat 16598611  T
103 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctcttaaactcttcattctatcacgcattg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
16598612 tgagtagccaagtgtgaaatagtttgtattgaagaaccatctttggcattcaatgccatagcagcagcttctcttaaactcttcattctatcacgcattg 16598711  T
203 ccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccacttt 302  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16598712 ccatgccttcttccccttccataacagacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccacttt 16598811  T
303 aagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16598812 aagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaattc 16598911  T
403 caaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaacataaaacctttttctttggttcttt 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
16598912 caaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaaaataaaacctttttctttggttcttt 16599011  T
503 c 503  Q
    |    
16599012 c 16599012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 16491067 - 16491003
Alignment:
292 aaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggcca 356  Q
    ||||||||||| | ||||||||| ||||||  |||||||||  ||||||| ||||||||||||||    
16491067 aaagccactttcacaccatcacacaacatagtagcattcatcccttgttcagcaaacaatggcca 16491003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Complemental strand, 3497 - 2994
Alignment:
1 ttaaggaaacaaccaataaacacctaactagaaacatcaaaataacaaaaataaat-atcaagagcaatattattttcctaaatcccaccaatcttctcc 99  Q
    |||||||||||||||||| ||||  || ||||||||||||||||| ||||  |||| || |||||||||| |||||| |||||||| |||||| || |||    
3497 ttaaggaaacaaccaatagacacaaaaatagaaacatcaaaataataaaagaaaattattaagagcaatactatttttctaaatcctaccaatgttttcc 3398  T
100 aattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctcttaaactcttcattctatcacgca 199  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
3397 aattgagtagccaagtgtgacatagtttgaattgaagaaccatctttggctttcaatgccatagcagcagattctcttaaactcttcattctatcacgca 3298  T
200 ttgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatcttcaaatttcaaccttaaagccac 299  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
3297 ttgcaataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatctcatcatcttcaaatttcaaccttaaagccac 3198  T
300 tttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3197 tttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccctcttgtatactttccaaagtcgaa 3098  T
400 ttccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaacataaaacctttttctttggttc 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
3097 ttccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaaaataaaacctttttctttggttc 2998  T
500 tttc 503  Q
    ||||    
2997 tttc 2994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 73 - 503
Target Start/End: Complemental strand, 22678 - 22248
Alignment:
73 ttttcctaaatcccaccaatcttctccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagatt 172  Q
    ||||||||||||||||||||| | |||| |||| ||||||||||||| | |||||| ||||||||||||||||| || ||||||||| ||| |||| | |    
22678 ttttcctaaatcccaccaatcatttccatttgactagccaagtgtgagagagtttgaattgaagaaccatctttgacattcaatgccttagtagcataat 22579  T
173 ctcttaaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatc 272  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||  ||||||||||| |||||||| ||||| |||||    
22578 ctcttaaactcttcattctatcacgcattgccttaccttcttccccttccatcaaacacttaatcacatttgcaattttatccttttctacaatctcatc 22479  T
273 atcttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcacc 372  Q
    ||||||||||||||||||||  |||||||||||| ||| || ||||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||    
22478 atcttcaaatttcaaccttatggccactttaagatcattacttaacataactgcattcattgcttgttctgcaaataaaggccaagctactattggcacc 22379  T
373 ccctcttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatg 472  Q
    |||||||| ||||| ||||||   |||||||| ||||||||||||||||||||||||||||| |||| ||| ||||||| |||||| |||||||||||||    
22378 ccctcttgcatactctccaaaactgaattccatccacaatgacttaaaaatccaccaactgacttttccttaagtatttgaacttgtggtgcccatgatg 22279  T
473 gcaacataaaacctttttctttggttctttc 503  Q
    | || || |||||||||||||| ||||||||    
22278 gtaaaatcaaacctttttcttttgttctttc 22248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 77 - 503
Target Start/End: Complemental strand, 57960 - 57537
Alignment:
77 cctaaatcccaccaatcttctccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctct 176  Q
    ||||| |||||||||  || ||| ||||| ||||||||||||| | ||| ||||||||||||||| | |   |||| | |||  |||||||| | ||| |    
57960 cctaagtcccaccaaaattttcccattgactagccaagtgtgacaaagtctgtattgaagaaccaccat---ctttaagtgcattagcagcataatcttt 57864  T
177 taaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatct 276  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||| | |||||||||||  ||||||||||  |||||||| ||||| |||||||||    
57863 taaactcttcattctttcacgcattctcttaccttcttccccttccatcaaacacttaatcacatttgcaatttcatccttttctacaatctcatcatct 57764  T
277 tcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccct 376  Q
    ||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
57763 tcaaatttcaaccttattgccactttaagaccatcacttaacaaaacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccct 57664  T
377 cttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaa 476  Q
    |||| ||||| ||||||   ||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||||||| |||    
57663 cttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaa 57564  T
477 cataaaacctttttctttggttctttc 503  Q
     ||||||||||||||||||||||||||    
57563 aataaaacctttttctttggttctttc 57537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 77 - 503
Target Start/End: Original strand, 14884 - 15307
Alignment:
77 cctaaatcccaccaatcttctccaattgagtagccaagtgtgaaatagtttgtattgaagaaccatctttaactttcaatgccatagcagcagattctct 176  Q
    ||||| |||||||||  || ||| ||||| ||||||||||||| | ||| ||||||||||||||| | |   |||| | |||  |||||||| | ||| |    
14884 cctaagtcccaccaaaattttcccattgactagccaagtgtgacaaagtctgtattgaagaaccaccat---ctttaagtgcattagcagcataatcttt 14980  T
177 taaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatct 276  Q
    ||||||||||||||| |||||||||  | ||||||||||||||||||| | |||||||||||  ||||||||||  |||||||| ||||| |||||||||    
14981 taaactcttcattctttcacgcattctcttaccttcttccccttccatcaaacacttaatcacatttgcaatttcatccttttctacaatctcatcatct 15080  T
277 tcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccct 376  Q
    ||||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||| || |||||||||||||||||||||||||    
15081 tcaaatttcaaccttattgccactttaagaccatcacttaacaaaacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccct 15180  T
377 cttgtatactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatggcaa 476  Q
    |||| ||||| ||||||   ||||||||||||||||||||||||||||||||||||||| | || || |||||||||||||||||||||||||||| |||    
15181 cttgcatactctccaaaactgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatgccaa 15280  T
477 cataaaacctttttctttggttctttc 503  Q
     ||||||||||||||||||||||||||    
15281 aataaaacctttttctttggttctttc 15307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 176 - 393
Target Start/End: Complemental strand, 1934 - 1717
Alignment:
176 ttaaactcttcattctatcacgcattgccataccttcttccccttccataacacacttaatcatctttgcaattttctccttttccacaatgtcatcatc 275  Q
    |||||||||||||||||||||||||||   ||||||||||||||||||| | |||||||||||  |||||| |||| |||||||||||||| ||||||||    
1934 ttaaactcttcattctatcacgcattgttttaccttcttccccttccatcaaacacttaatcacatttgcagttttatccttttccacaatctcatcatc 1835  T
276 ttcaaatttcaaccttaaagccactttaagaccatcacataacataacagcattcattgcttgttcggcaaacaatggccaagctactattggcaccccc 375  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||    
1834 ttcaaatttcaaccttattgccactttaagaccatcacataacataacagcattcattgcttgttctgcaaataaaggccaagctactattggcaccccc 1735  T
376 tcttgtatactttccaaa 393  Q
    ||||| ||||| ||||||    
1734 tcttgcatactctccaaa 1717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 430
Target Start/End: Complemental strand, 1432 - 1390
Alignment:
388 tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa 430  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
1432 tccaaagttgaactccaaccacaatgacttaaaaaaccaccaa 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 430
Target Start/End: Original strand, 8294441 - 8294483
Alignment:
388 tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa 430  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
8294441 tccaaagttgaactccaaccacaatgacttaaaaacccaccaa 8294483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 430
Target Start/End: Complemental strand, 33257314 - 33257272
Alignment:
388 tccaaagtcgaattccaaccacaatgacttaaaaatccaccaa 430  Q
    |||||||| ||| |||||||||||||||||||||| |||||||    
33257314 tccaaagttgaactccaaccacaatgacttaaaaaaccaccaa 33257272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 467
Target Start/End: Original strand, 560444 - 560529
Alignment:
382 atactttccaaagtcgaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgccca 467  Q
    ||||| |||||| | |||||||||||||||||| |||||||| |||||| ||  || || || || | ||||||||| ||||||||    
560444 atactctccaaaattgaattccaaccacaatgagttaaaaatgcaccaattgctttgtgtttaaggacttcaacttgtggtgccca 560529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 473
Target Start/End: Complemental strand, 5906221 - 5906149
Alignment:
401 tccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg 473  Q
    |||||||||||||||| || ||||||||||||||  | ||  | || |||||||  |||||||||||||||||    
5906221 tccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg 5906149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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