View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7469_high_15 (Length: 240)
Name: NF7469_high_15
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_high_15 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 46239102 - 46238874
Alignment:
| Q |
12 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239102 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
46239003 |
T |
|
| Q |
112 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239002 |
cagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
46238903 |
T |
|
| Q |
212 |
acacaacctctgtagaatatggtttcttc |
240 |
Q |
| |
|
|| | |||||||||||||||||||||||| |
|
|
| T |
46238902 |
accccacctctgtagaatatggtttcttc |
46238874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 240
Target Start/End: Original strand, 3455555 - 3455784
Alignment:
| Q |
12 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455555 |
catcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatccattttacacca |
3455654 |
T |
|
| Q |
112 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3455655 |
cagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttta |
3455754 |
T |
|
| Q |
212 |
a-cacaacctctgtagaatatggtttcttc |
240 |
Q |
| |
|
| | | |||||||||||||| ||||||||| |
|
|
| T |
3455755 |
acccccacctctgtagaatacggtttcttc |
3455784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University