View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_high_2 (Length: 513)
Name: NF7469_high_2
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 5141893 - 5141432
Alignment:
| Q |
1 |
aaacaattgatcatctttttagagagtgtgattgggtgaaac-agtgtggtttgcctcaccacactagaatttgcgaaggatatgttattcttaaatctc |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5141893 |
aaacaattgatcatctttttagagagtgtgattgggtgaaaatagtgtggtttgcctcaccacactagaatttgcgaaggatatgttattcttaaatctc |
5141794 |
T |
|
| Q |
100 |
acagttgaatctgactcttccaatgtcatagatgctctcaaaaagccttaacatcagagttcctactttggttctattgttggagattgcaaaagtttct |
199 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5141793 |
acagttgaatctgactcttccaatgtcataga-----------agccttaacatcagagttcctactttggttctattgttggagattgcaaaagtttct |
5141705 |
T |
|
| Q |
200 |
tctctagtttctattatttagagttagtacatgttcgtcgtgaggccaattaagcggcacattatttagcaaagtttgccatttcttctctaactgattt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5141704 |
tctctagtttctattatttagagttagtacatgttcgtcgtgaggccaattaagcggcacattatttagcaaagtttgccatttcttctctaactgattt |
5141605 |
T |
|
| Q |
300 |
tgtttggattgaagaaactcctaagtgtatttcttctgtagtggcacttgatgtgttaccattgtttgattaataaaatcagttatttcaacnnnnnnng |
399 |
Q |
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| T |
5141604 |
tgtttggattgaagaaactcttaagtgtatttcttctgtagtggcacttgatgtgttaccattgtttgattaataaaatcagttatttcaacaaaaaaaa |
5141505 |
T |
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| Q |
400 |
tatacaaaattttgattagatacatgtgtaaaaacgatttacactatcggtacatagatatttatctcatttt |
472 |
Q |
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| T |
5141504 |
tatacaaaattttgattagatatatgtgtaaaaacgatttacactatcggtacatagatatttatctcatttt |
5141432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 29161012 - 29161113
Alignment:
| Q |
64 |
ctagaatttgcgaaggatatgttattcttaaatctcacagttgaatctgactcttccaatgtcatagatgctctcaaaaagccttaacatcagagttcct |
163 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| |||||||||| |||| |
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| T |
29161012 |
ctagaatttgcgaaagatatgttattcctaaatctcacatctgaatctgactcttctattgtcatagatgctctaaaaaagcctcaacatcagagatcct |
29161111 |
T |
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| Q |
164 |
ac |
165 |
Q |
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|| |
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| T |
29161112 |
ac |
29161113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 311
Target Start/End: Original strand, 29161186 - 29161283
Alignment:
| Q |
212 |
attatttagagttagtacatgttcgtcgtgaggccaattaagcggcacattatttagcaaagtttgccatttcttctctaactgattttgtttggattga |
311 |
Q |
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| T |
29161186 |
attatttagagttagtacac--tcgtcgtgagactaatcaagcggcatattatttagtaaagtttgtcatttcttctctaactggttttgtttggattga |
29161283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 390
Target Start/End: Original strand, 42797349 - 42797481
Alignment:
| Q |
259 |
cattatttagcaaagtttgccatttcttctctaactgattttgtttggattgaagaaactcctaagtgtatttcttctgtagtggcacttgatgtgttac |
358 |
Q |
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|||||||||||||||||||| |||| |||||||||| ||||| | ||||| ||||| | |||| | |||||| |||||||| |||||||| | || | |
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| T |
42797349 |
cattatttagcaaagtttgctatttattctctaacttattttttatggatggaagagattcctcattgtattgtagctgtagtgacacttgatttattgc |
42797448 |
T |
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| Q |
359 |
cat-tgtttgattaataaaatcagttatttcaa |
390 |
Q |
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||| | |||| |||||| ||| ||||||||||| |
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| T |
42797449 |
catctttttggttaatacaattagttatttcaa |
42797481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 16533643 - 16533578
Alignment:
| Q |
256 |
gcacattatttagcaaagtttgccatttcttctctaactgattttgtttggattgaagaaactcct |
321 |
Q |
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|||||||||||||| || ||||| |||||||| | ||||||||||||||||||||| |||||| |
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| T |
16533643 |
gcacattatttagccaaatttgcaatttcttcgtaatatgattttgtttggattgaagagactcct |
16533578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 347 - 387
Target Start/End: Original strand, 5745925 - 5745965
Alignment:
| Q |
347 |
ttgatgtgttaccattgtttgattaataaaatcagttattt |
387 |
Q |
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| T |
5745925 |
ttgatgtgttaccatcttttgattaataaaatcggttattt |
5745965 |
T |
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