View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7469_high_4 (Length: 433)
Name: NF7469_high_4
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_high_4 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 10787017 - 10787425
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787017 |
tggagatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
10787116 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10787117 |
gaaccaactgaggaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtcccc--gcctgttatctctctgcgatagcgcgcaacgttt |
10787214 |
T |
|
| Q |
213 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787215 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
10787314 |
T |
|
| Q |
313 |
cagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
10787315 |
cagagccagcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacat |
10787414 |
T |
|
| Q |
413 |
gtgatgtccat |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
10787415 |
gtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 14688776 - 14688368
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||| || || |||||||| | |
|
|
| T |
14688776 |
tggagatcatattgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgac |
14688677 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
14688676 |
ggaccaaccgaggaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtcccc--gcccgttatatctctgcgatagcgcgcgacgttt |
14688579 |
T |
|
| Q |
213 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
312 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||| |||| || ||| ||||| ||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
14688578 |
cttgtctccaaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtca |
14688479 |
T |
|
| Q |
313 |
cagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||||||| |||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| ||||| |
|
|
| T |
14688478 |
cagagccagcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacat |
14688379 |
T |
|
| Q |
413 |
gtgatgtccat |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
14688378 |
gtgatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 7360778 - 7360370
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| || || |||||||| | |
|
|
| T |
7360778 |
tggagatcatattgctcatcctcagcagggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgac |
7360679 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
| | |||| |||||||||| |||||||| ||||||||||||||||| |||||| ||||||| | ||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
7360678 |
ggatcaaccgaggaggcagtaatcttttataccagcctgaaacgaaacggaaagaggtgtccac--gcctgttatgtctctacgatagcgcgcgacgttt |
7360581 |
T |
|
| Q |
213 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| |||| || ||||||||| |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
7360580 |
cgtgtctccaaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtca |
7360481 |
T |
|
| Q |
313 |
cagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||||||| |||||||| ||||||| ||| || |||||||||||||| | |||||||||||| ||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
7360480 |
cagagccagcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacat |
7360381 |
T |
|
| Q |
413 |
gtgatgtccat |
423 |
Q |
| |
|
||| ||||||| |
|
|
| T |
7360380 |
gtggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 28 - 336
Target Start/End: Original strand, 10157805 - 10158119
Alignment:
| Q |
28 |
tcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggag |
127 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| || || || |||| || | |||||||||||||| || || |||||||| |||| |||||| || | |
|
|
| T |
10157805 |
tcgtcctcagcaggatgaaatcctcgatagttgcgccttaacccatatccagggcagttgtgccagttgttgcagaatcgacgacgaatcaactgggggg |
10157904 |
T |
|
| Q |
128 |
g--------caggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtct |
219 |
Q |
| |
|
| ||| || |||||||||||||||||||||||||| || ||| |||||| | | |||||||| |||||||| |||||||| || || |||| |
|
|
| T |
10157905 |
gggggggggcagcaaccttttgtaccagcctgaaacgaagcgaaagtgggagtcccctccc--gttatctccctgcgataacgcgcaacattcttcgtct |
10158002 |
T |
|
| Q |
220 |
ccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagcc |
319 |
Q |
| |
|
||||||||||||| || |||| |||||| || |||| | || ||||| ||||||||||| || |||||| ||||| || ||| |||| ||||| |
|
|
| T |
10158003 |
ccaaaagagaccaaaagtcattgaaaagttcagttatatcaggagagataccgtcaagcgccctcaacattacatcaaagtaaagcgcgctcacggagcc |
10158102 |
T |
|
| Q |
320 |
ggcatccatagcattct |
336 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10158103 |
atcatccatagcattct |
10158119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 1729835 - 1730243
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1729835 |
tggagatcatattgctcgtcctcagcaaggcgataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggc |
1729934 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
1729935 |
ggaccaactgaggaggcagtaatctcttataccagcctgaaacgaagcggaaacgggtgtcccc--gcctgttatctctctgcgatagcgcgcgacgttt |
1730032 |
T |
|
| Q |
213 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1730033 |
cttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtca |
1730132 |
T |
|
| Q |
313 |
cagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||||||| || ||||||||||||| || ||| ||||||| ||||||||| ||||||||||||| ||||||||| || |||||||||| |||||| ||||| |
|
|
| T |
1730133 |
cagagccagcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacat |
1730232 |
T |
|
| Q |
413 |
gtgatgtccat |
423 |
Q |
| |
|
|||||||||| |
|
|
| T |
1730233 |
atgatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 22338640 - 22338584
Alignment:
| Q |
279 |
gccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
335 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||||||||| ||||||||||||||| |
|
|
| T |
22338640 |
gccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 14329307 - 14328899
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| || || |||||||| | |
|
|
| T |
14329307 |
tggagatcatattgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgac |
14329208 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
|| |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||| | | | ||||| ||||||||||||||||| |||||| |
|
|
| T |
14329207 |
aaatcaaccgaggaggcagtaatcttttataccagcctgaaacgaagcggaaacgggtgtccacaccc--gttatgtctctgcgatagcgcgcgacgttt |
14329110 |
T |
|
| Q |
213 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14329109 |
cgtgtctccaaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtca |
14329010 |
T |
|
| Q |
313 |
cagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||||||| |||||||| ||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
14329009 |
cagagccagcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacat |
14328910 |
T |
|
| Q |
413 |
gtgatgtccat |
423 |
Q |
| |
|
||||||||||| |
|
|
| T |
14328909 |
gtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 18166922 - 18166544
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || | |||||| || |||| ||||||||||| || || |||||||| | || ||||| |||||||| | |
|
|
| T |
18166922 |
tcagcaggatgaaaccctcgatagttacgccttagtccatctccacgacaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagca |
18166823 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaac-gttttttgtctccaaaagagacca |
232 |
Q |
| |
|
| | |||||||||||||| |||||||||||| ||| || |||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
18166822 |
accgcttgtaccagcctgagacgaagcggaaatgggagt--cccctcctgttatctccctgcgataacgcgcaacatttttttgtctccaaaagagacca |
18166725 |
T |
|
| Q |
233 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
332 |
Q |
| |
|
|| |||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
18166724 |
aaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
18166625 |
T |
|
| Q |
333 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
||| | ||| | | || |||||||||||| |||||| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
18166624 |
ttcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
18166544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 24954578 - 24954977
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| |||||||| | |
|
|
| T |
24954578 |
tggagatcatattgcttatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgttgcag---------aatcgacgac |
24954668 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
| | ||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||||| | ||||||||| |||| ||||| ||||| |||||| |
|
|
| T |
24954669 |
ggatcaatcgaggaggcagtaatcttttataccagcctgaaacgaagcggaaacaggtgtccac--gcctgttatgtctcgacgatatcgcgcgacgttt |
24954766 |
T |
|
| Q |
213 |
tttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtca |
312 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||| |||| || ||| ||||| |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
24954767 |
cgtgtctccagaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtca |
24954866 |
T |
|
| Q |
313 |
cagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||||||| |||||||| ||||||| || |||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||| |||||| ||||| |
|
|
| T |
24954867 |
cagagccagcatccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacat |
24954966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 23621749 - 23621371
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggagg-cagg |
132 |
Q |
| |
|
|||||||| ||| | ||| ||||||| || || |||||||| || |||||||||||||||| || || |||||||| |||| ||||| || || ||| |
|
|
| T |
23621749 |
tcagcaggatgaaaccctagatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagc |
23621650 |
T |
|
| Q |
133 |
aatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
232 |
Q |
| |
|
|| || |||||||||| |||||||||||||||| ||| |||||| | |||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
23621649 |
aacctcttgtaccagcatgaaacgaagcggaaatgggagtcccctc--ctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagacca |
23621552 |
T |
|
| Q |
233 |
gaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
332 |
Q |
| |
|
|| ||| || ||| ||||| ||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||||| |
|
|
| T |
23621551 |
aaagtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagca |
23621452 |
T |
|
| Q |
333 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
||| | ||| | || | |||||||||||| |||||| || ||||||||||| || || |||| ||| ||||||||| |
|
|
| T |
23621451 |
ttcctaagcaaacgtttaacggtaggaatgcatggctcaatatctagcatgaattgagtgcatctcaaaatacaaaacatg |
23621371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 23196144 - 23195767
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||||||||||||| || || |||||||| |||| || || ||||||| | |
|
|
| T |
23196144 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaaca |
23196045 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccag |
233 |
Q |
| |
|
| || || |||||||||| || ||||||||| ||| |||||| | || ||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
23196044 |
acctcttaaaccagcctgagacaaagcggaaatgggagtcccctc--ctattatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaa |
23195947 |
T |
|
| Q |
234 |
aaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcat |
333 |
Q |
| |
|
|| |||| || ||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| | |
|
|
| T |
23195946 |
aagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgt |
23195847 |
T |
|
| Q |
334 |
tctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
|| | ||| | | || |||||||||||| |||||| ||||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
23195846 |
tcctaagcaaacacttgacggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgcaaaacatg |
23195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 34 - 413
Target Start/End: Original strand, 22643208 - 22643584
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || ||||||||||| |||| || || |||||||| |||| |||| ||||| || | |
|
|
| T |
22643208 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagca |
22643307 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccag |
233 |
Q |
| |
|
| || |||||||||||| | |||||| ||||| ||| ||||| | ||||| |||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
22643308 |
acctcttgtaccagcctaagacgaagtggaaatgggactcccctc--ctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagaccaa |
22643405 |
T |
|
| Q |
234 |
aaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcat |
333 |
Q |
| |
|
|| |||| || ||| ||||| ||||| ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| || | |
|
|
| T |
22643406 |
aagtcattgaagagttcagcggtatcaa-aatgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgt |
22643504 |
T |
|
| Q |
334 |
tctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
|| | ||| | | || |||||||||| |||||| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
22643505 |
tcctaagcaaacgcttgacaataggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
22643584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 22080833 - 22081242
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| ||||||||| || || |||||||| ||||| ||||||||||| || ||||||||||||||| |||||||||||||||| || || |||||||| | |
|
|
| T |
22080833 |
tggagatcatattgttcatcttcagcaggatgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgac |
22080932 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcc-tgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgtt |
211 |
Q |
| |
|
| | ||||| |||||||| ||||| ||||||||||| | | ||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||| |
|
|
| T |
22080933 |
ggattaactggggaggcagtaatctcttgtaccagccattagacgaagcggaaacgggtatcccc--gcctgttatctccctgcgatagcgcgcgacgtt |
22081030 |
T |
|
| Q |
212 |
ttttgtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtc |
311 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| ||| ||| | |||| || ||| ||| | |||||||||||||||||| |||||||| || |||||| |
|
|
| T |
22081031 |
tcttgtctccaaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtc |
22081130 |
T |
|
| Q |
312 |
acagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaaca |
411 |
Q |
| |
|
||||| || |||||||| || |||| | || |||| || |||||||||||| |||||| |||| ||| ||||||||||| |||| ||||||||||| |
|
|
| T |
22081131 |
acagaaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaaca |
22081230 |
T |
|
| Q |
412 |
tgtgatgtccat |
423 |
Q |
| |
|
| |||||||||| |
|
|
| T |
22081231 |
tatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 41375729 - 41375532
Alignment:
| Q |
13 |
tggacatcatattgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
41375729 |
tggagatcatattgctcgtcctcagcagggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggc |
41375630 |
T |
|
| Q |
113 |
gaaccaactgaggaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttt |
212 |
Q |
| |
|
||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41375629 |
gaaccaactaaggaggcagtaatctcttgtaccagcctgaaacgaagcggaaacgggtgt--ccccgcctgttatctctctgcgatagcgcgcgacgttt |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 237 - 423
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
237 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattct |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
337 |
gcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
423 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 22799844 - 22799785
Alignment:
| Q |
275 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
334 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
22799844 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 34 - 417
Target Start/End: Original strand, 74318 - 74699
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || | |||||| || |||||||||||||||| || || |||||||| || | |||| |||||||| | |
|
|
| T |
74318 |
tcagcaggatgataccctcggtagttacgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagta |
74417 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccag |
233 |
Q |
| |
|
| || |||||||||||||| |||||||| |||||||||||||| | |||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
74418 |
acctcttgtaccagcctgagacgaagcgaaaacgggtgtcccctc--ctgttatctccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaa |
74515 |
T |
|
| Q |
234 |
aaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcat |
333 |
Q |
| |
|
|| |||| || ||| ||||| |||| || ||| ||||| ||| || |||| || |||||| ||||| || ||||||||||| || ||||||||||| | |
|
|
| T |
74516 |
aactcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgt |
74615 |
T |
|
| Q |
334 |
tctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgat |
417 |
Q |
| |
|
||| | ||| | || |||||||||||| |||||| || |||||||||||||| || |||| |||||||||||| |||| |
|
|
| T |
74616 |
tcttaagcaaatgcttgacggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgcaaaacatatgat |
74699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 413
Target Start/End: Original strand, 38791 - 39171
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
130 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | ||||| |||||||| || || ||||||||||||| |||||||| |||| |
|
|
| T |
38791 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
38890 |
T |
|
| Q |
131 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagac |
230 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||| ||| ||| | | || ||||||| |||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
38891 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctc--ctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagac |
38988 |
T |
|
| Q |
231 |
cagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatag |
330 |
Q |
| |
|
|| || |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
38989 |
caaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatag |
39088 |
T |
|
| Q |
331 |
cattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
| ||| | ||| | || || |||||||||||| ||||| |||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
39089 |
cgttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
39171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 31 - 413
Target Start/End: Complemental strand, 32947 - 32567
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
130 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | ||||| |||||||| || || ||||||||||||| |||||||| |||| |
|
|
| T |
32947 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
32848 |
T |
|
| Q |
131 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagac |
230 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||| ||| ||| | | || ||||||| |||||||| |||||||| ||||| ||||||||||||||| |
|
|
| T |
32847 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctc--ctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagac |
32750 |
T |
|
| Q |
231 |
cagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatag |
330 |
Q |
| |
|
|| || |||| |||||| ||||| |||| | ||| ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| |
|
|
| T |
32749 |
caaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatag |
32650 |
T |
|
| Q |
331 |
cattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
| ||| | ||| | || || |||||||||||| ||||| |||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
32649 |
cgttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
32567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 34 - 413
Target Start/End: Complemental strand, 4138 - 3761
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||||| | |||||| || |||||||||||||||| || || |||| ||| ||||| ||| | |||||||| | |
|
|
| T |
4138 |
tcagcaggatgaaaccctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagca |
4039 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccag |
233 |
Q |
| |
|
| || |||||||||| ||| || |||| |||| ||| ||||| | |||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4038 |
acctattgtaccagcatgagacaaagcagaaatgggaatcccctc--ctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaa |
3941 |
T |
|
| Q |
234 |
aaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcat |
333 |
Q |
| |
|
|| |||| || ||| ||||| |||| | ||| |||| ||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| || | |
|
|
| T |
3940 |
aagtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgt |
3841 |
T |
|
| Q |
334 |
tctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
||| | || | | ||||||||||||||| |||||| ||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
3840 |
tcttaagcagacgcttgatggtaggaatgcatggctcaacatccagcatgaattaagtgcatctcaaaatgcaaaacatg |
3761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 31 - 413
Target Start/End: Complemental strand, 14562533 - 14562148
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggagg-- |
128 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || ||||||||||||| ||||| || || |
|
|
| T |
14562533 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggg |
14562434 |
T |
|
| Q |
129 |
---caggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaa |
225 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| ||| ||||| | || ||||||| |||||||| |||||||| ||||| |||||||||| |
|
|
| T |
14562433 |
gggcagcaaccttttgtaccagcctgaaacgaagcggaaatgggaatcccctc--ctattatctccctgcgataacgcgcaacatttttcgtctccaaaa |
14562336 |
T |
|
| Q |
226 |
gagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatc |
325 |
Q |
| |
|
||||||| || |||| |||||| || || |||| | ||| ||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || || |
|
|
| T |
14562335 |
gagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtc |
14562236 |
T |
|
| Q |
326 |
catagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
|||||||||| | ||| | | || |||||||||||| |||||| ||||||||| ||| ||||| |||| ||| ||||||||| |
|
|
| T |
14562235 |
catagcattcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgtgttgagtacatctcaaaatacaaaacatg |
14562148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 331
Target Start/End: Complemental strand, 13284670 - 13284372
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
130 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||| || | |||||||||||||| || || ||||| || |||| |||| || |||| |
|
|
| T |
13284670 |
tcctcagcaggatgaattcctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggca |
13284571 |
T |
|
| Q |
131 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagac |
230 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||| || || |||| || |||||||| |||||||| || ||||| || || ||||||||||||||| |
|
|
| T |
13284570 |
gcaacctcttgtaccagcctgaaacgaagcgaaaataggagt--cccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagac |
13284473 |
T |
|
| Q |
231 |
cagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatag |
330 |
Q |
| |
|
|| || |||| || ||| || || |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| |||||||||| || ||||||| |
|
|
| T |
13284472 |
caaaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatag |
13284373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 331
Target Start/End: Complemental strand, 14742016 - 14741960
Alignment:
| Q |
275 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
331 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |
|
|
| T |
14742016 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 334
Target Start/End: Original strand, 19284 - 19584
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
130 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| ||||| || |||| |
|
|
| T |
19284 |
tcctcggcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactgggg-ggca |
19382 |
T |
|
| Q |
131 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagac |
230 |
Q |
| |
|
| || || ||||||||||||||||||||| ||||| ||| ||||| | |||||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
19383 |
gcaacctcttgtaccagcctgaaacgaagtggaaatgggaatcccctc--ctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagac |
19480 |
T |
|
| Q |
231 |
cagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatag |
330 |
Q |
| |
|
|| || |||| |||||| || || |||| | ||| ||||| || |||| |||| | |||||| ||||| || ||| |||||||||| || ||||||| |
|
|
| T |
19481 |
caaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccatcagaattacatcaaagtaaagagcgctcacagagccagcgtccatag |
19580 |
T |
|
| Q |
331 |
catt |
334 |
Q |
| |
|
|||| |
|
|
| T |
19581 |
catt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 412
Target Start/End: Original strand, 13680 - 13823
Alignment:
| Q |
269 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggc |
368 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||||||||||| | ||| | | || |||||||||||| ||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc |
13779 |
T |
|
| Q |
369 |
tcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
412 |
Q |
| |
|
||| ||||||||| ||| ||||| |||| ||| |||||||| |
|
|
| T |
13780 |
tcaacatccagcatgtgttgagtacatctcaaaatacaaaacat |
13823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 335
Target Start/End: Original strand, 35865 - 36167
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
130 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||| ||||| | | |||||||||||||| || || ||||| || |||| ||||| || |||| |
|
|
| T |
35865 |
tcctcagcaggatgaaaccctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggca |
35964 |
T |
|
| Q |
131 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagac |
230 |
Q |
| |
|
| || || ||||||||||||||||||||||| || ||| |||||| | |||||||||| |||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
35965 |
gcaacctcttgtaccagcctgaaacgaagcgaaagtgggagtcccctc--ctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagac |
36062 |
T |
|
| Q |
231 |
cagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatag |
330 |
Q |
| |
|
||||| |||| || ||| || | |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| | || || || || ||||||| |
|
|
| T |
36063 |
cagaagtcattgaagagttcagtgatatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgtttacggaaccagcgtccatag |
36162 |
T |
|
| Q |
331 |
cattc |
335 |
Q |
| |
|
||||| |
|
|
| T |
36163 |
cattc |
36167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 335
Target Start/End: Complemental strand, 12574 - 12276
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| |||| ||| ||||| | |
|
|
| T |
12574 |
tcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagca |
12476 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccag |
233 |
Q |
| |
|
| || |||||||||||| |||| |||| |||| ||| || || | |||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
12475 |
acctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctc--ctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaa |
12378 |
T |
|
| Q |
234 |
aaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcat |
333 |
Q |
| |
|
|| |||| |||||| || || |||| | ||| | ||| |||||||||||||| ||||| ||||| || ||| |||||||||| || |||||||||| |
|
|
| T |
12377 |
aagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcat |
12278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 34 - 335
Target Start/End: Complemental strand, 18325 - 18027
Alignment:
| Q |
34 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
133 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| |||| ||| ||||| | |
|
|
| T |
18325 |
tcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagca |
18227 |
T |
|
| Q |
134 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccag |
233 |
Q |
| |
|
| || |||||||||||| |||| |||| |||| ||| || || | |||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
18226 |
acctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctc--ctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaa |
18129 |
T |
|
| Q |
234 |
aaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcat |
333 |
Q |
| |
|
|| |||| |||||| || || |||| | ||| | ||| |||||||||||||| ||||| ||||| || ||| |||||||||| || |||||||||| |
|
|
| T |
18128 |
aagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcat |
18029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 413
Target Start/End: Original strand, 28608 - 28880
Alignment:
| Q |
139 |
ttgtaccagcctgaaacgaagcggaaacgggtgtccccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccagaaatc |
238 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||| | |||||||||| |||||||| |||||||| ||||| ||||||||||||||||| || || |
|
|
| T |
28608 |
ttgtaccagcctgaaacgaagcgaaaatgggagtcccctc--ctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtc |
28705 |
T |
|
| Q |
239 |
atgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattctgc |
338 |
Q |
| |
|
| || ||| || || |||| | ||| ||||| |||||||||||||| |||||| ||||| || ||| | |||||||| || |||||||| ||| |
|
|
| T |
28706 |
aatgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttccta |
28805 |
T |
|
| Q |
339 |
aacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
413 |
Q |
| |
|
| ||| | | || |||||||||||| |||||| || ||||||||||| || || |||| ||| ||||||||| |
|
|
| T |
28806 |
agcaaacgcttgacggtaggaatgcatggctcaacatctagcatgaattgagtgcatctcaaaatacaaaacatg |
28880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 31 - 161
Target Start/End: Complemental strand, 19030469 - 19030339
Alignment:
| Q |
31 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
130 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||| | ||||| || | |||||||||||||| || || |||||||| |||| ||||| | |||| |
|
|
| T |
19030469 |
tcctcagcaggatgaaaccctcgatagttgcgtcttagcccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactggaggggca |
19030370 |
T |
|
| Q |
131 |
ggaatcttttgtaccagcctgaaacgaagcg |
161 |
Q |
| |
|
| || || || ||||||||| |||||||||| |
|
|
| T |
19030369 |
gcaacctcttataccagcctaaaacgaagcg |
19030339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 9280 - 9340
Alignment:
| Q |
275 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
335 |
Q |
| |
|
|||||||||||||| | ||| ||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
9280 |
aagcgccctcagcatgatatcaaagtagagtgcgctcacggagccggcatccatagcattc |
9340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Original strand, 384862 - 384922
Alignment:
| Q |
275 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
335 |
Q |
| |
|
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||| |
|
|
| T |
384862 |
aagcgccctcaacatgacatcaaagtagagctcgctcacagagccggcatccatagcattc |
384922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University