View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_high_8 (Length: 324)
Name: NF7469_high_8
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_high_8 |
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| [»] scaffold0067 (2 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 19 - 315
Target Start/End: Complemental strand, 11729034 - 11728734
Alignment:
| Q |
19 |
atgaaagatgatgagttttgtaacatcattttatttaaatatattcttattatttaataaaacaacgtcgggatttagggtgttacaatggaccctttat |
118 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |
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| T |
11729034 |
atgaaagacgatgagttttgtaacatcattttatttaaatatattcttattatttaataaaacaacgtcgggattcaggatgttacaatggacccttcat |
11728935 |
T |
|
| Q |
119 |
agtaacacgactatgcaagaat----tcatagaaatttgggacaacatgagatgttatgccaaggtgaatcgacataaattgaagtatgtagaagatcat |
214 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11728934 |
agtaacacgactatgcaagaatagtctcatagaaatttaggacaacatgagatgttatgccaaggtgaatcgacataaactgaagtatgtagaagatcat |
11728835 |
T |
|
| Q |
215 |
gtccaggagatgggagccgaagaagatgaacaagttttgaagaggttaaaaggcacaatgtagacttgtcagtcaggcttgaaagagatcatattcatct |
314 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11728834 |
gtccaggagatgggagccgaataagatgaacaagttttgaagaggttaaagggcacaatgtagactcgtcagtcaggcttgaaagagatcatattcatct |
11728735 |
T |
|
| Q |
315 |
c |
315 |
Q |
| |
|
| |
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|
| T |
11728734 |
c |
11728734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 9866347 - 9866406
Alignment:
| Q |
47 |
ttttatttaaatatattcttattatttaataaaacaacgtcggga-tttagggtgttaca |
105 |
Q |
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| T |
9866347 |
ttttatttaaatatattcattttatttaataattcaaagtcgggattttagggtgttaca |
9866406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 24146769 - 24146854
Alignment:
| Q |
19 |
atgaaagatgatgagttttgtaacatcattttatttaaatatattcttattatttaataaaacaacgtcgggatttagggtgttac |
104 |
Q |
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|||| |||||||||||||| ||||||| |||||||||||||||||||| |||||||||||| |||||| | |||||||||||||| |
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| T |
24146769 |
atgatagatgatgagttttataacatccttttatttaaatatattcttcttatttaataaatcaacgttgatatttagggtgttac |
24146854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 17421168 - 17421245
Alignment:
| Q |
26 |
atgatgagttttgtaacatcattttatttaaatatattcttattatttaataaaacaacgtcgggatttagggtgtta |
103 |
Q |
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|||||||||||||||||||| ||||||||||||| ||| |||||||||||||| ||| | ||||||||||||||| |
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| T |
17421168 |
atgatgagttttgtaacatccttttatttaaatacatttgtattatttaataaatcaaagataggatttagggtgtta |
17421245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 29481819 - 29481782
Alignment:
| Q |
19 |
atgaaagatgatgagttttgtaacatcattttatttaa |
56 |
Q |
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|||| |||||||||||||||||||||| |||||||||| |
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| T |
29481819 |
atgacagatgatgagttttgtaacatccttttatttaa |
29481782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: scaffold0067
Description:
Target: scaffold0067; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 12985 - 12898
Alignment:
| Q |
19 |
atgaaagatgatgagttttgtaacatcatttt-atttaaatatattcttattatttaataaaacaacgtcgggatttagggtgttaca |
105 |
Q |
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|||| |||||| ||||||||||||||| |||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||| |
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| T |
12985 |
atgacagatgacgagttttgtaacatcctttttatttaaatatatacttattatttaataaatcagagtcgggatttagggtgttaca |
12898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0067; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 20043 - 19956
Alignment:
| Q |
19 |
atgaaagatgatgagttttgtaacatcatttt-atttaaatatattcttattatttaataaaacaacgtcgggatttagggtgttaca |
105 |
Q |
| |
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|||| |||||| ||||||||||||||| |||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||| |
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| T |
20043 |
atgacagatgacgagttttgtaacatcctttttatttaaatatatacttattatttaataaatcagagtcgggatttagggtgttaca |
19956 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 31 - 105
Target Start/End: Complemental strand, 14450501 - 14450427
Alignment:
| Q |
31 |
gagttttgtaacatcattttatttaaatatattcttattatttaataaaacaacgtcgggatttagggtgttaca |
105 |
Q |
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|
||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||| |
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| T |
14450501 |
gagttttgtgacatcctcttatttaaatatattcttattatttaataaatcaacgtcgagctttagcgtgttaca |
14450427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 18545629 - 18545688
Alignment:
| Q |
47 |
ttttatttaaatatattcttattatttaataaaa-caacgtcgggatttagggtgttaca |
105 |
Q |
| |
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|||||| | ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
18545629 |
ttttatcttaatatatacttattattaaataaaaacaacgtcgggatttagggtgttaca |
18545688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 19264831 - 19264760
Alignment:
| Q |
35 |
tttgtaacatcatttta-tttaaatatattcttattatttaataaaacaacgtcgggatttagggtgttaca |
105 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| | | |||||||||||| |
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| T |
19264831 |
tttgtaacatcattttaatttaaatatattcttattatttaataaatcaatttcgcgttatagggtgttaca |
19264760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 103
Target Start/End: Original strand, 26863030 - 26863087
Alignment:
| Q |
47 |
ttttatttaaatatattcttattatttaataaaa-caacgtcgggatttagggtgtta |
103 |
Q |
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|
|||||| | ||||||| ||||||||| ||||||| ||||||||||||||||||||||| |
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|
| T |
26863030 |
ttttatcttaatatatacttattattaaataaaaacaacgtcgggatttagggtgtta |
26863087 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 19872038 - 19871979
Alignment:
| Q |
47 |
ttttatttaaatatattcttattatttaataaaa-caacgtcgggatttagggtgttaca |
105 |
Q |
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|
|||||| | ||||||| ||||||||| | ||||| ||||||||||||||||||||||||| |
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| T |
19872038 |
ttttatcttaatatatacttattattaattaaaagcaacgtcgggatttagggtgttaca |
19871979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 17598 - 17632
Alignment:
| Q |
77 |
aaaacaacgtcgggatttagggtgttacaatggac |
111 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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|
| T |
17598 |
aaaacaacgtcgggatttagggtgttacagtggac |
17632 |
T |
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