View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7469_high_9 (Length: 306)
Name: NF7469_high_9
Description: NF7469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7469_high_9 |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 1889366 - 1889664
Alignment:
| Q |
8 |
ttggtgttcgaggattgttgcctcactgactgcccgttcacggaaagaagataagtttggggttgctcagctttctgggagtaacactgctgtggtttcg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
1889366 |
ttggtgttcgaggattgttgcctcactgactgcccgttcacgcaaagaagataagtttggggttgctcagctttctgggaataacgctgctgtggtttcg |
1889465 |
T |
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| Q |
108 |
accttgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatacccaaatcagttgggatctgctgttaaaagagcaaatg |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
1889466 |
accctgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatcaccaaatcagttgggatctgctgttaaaagagaaaatg |
1889565 |
T |
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| Q |
208 |
ggccagtgaattcaaaagcttatgctattgctgatgttctcaagacatcaatctaccaaatagtatctgcattccatgatgagatgttgtctgatacta |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1889566 |
ggccagtgaattcaaaagcttatgctattgctgatgttctcaagacatcaatctatcaaatagtatctgcattccatgatgagatgttgtctgatacta |
1889664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 1666868 - 1666574
Alignment:
| Q |
8 |
ttggtgttcgaggattgttgcctcactgactgcccgttcacggaaagaagataagtttggggttgctcagctttctgggagtaacactgctgtggtttcg |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
1666868 |
ttggtgttcaaggattgttgcctcactgactgcccgttcatgcaaagaagataagtttgggtttgctcggctttctgggagtaacactgctgtggtttca |
1666769 |
T |
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| Q |
108 |
accttgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatacccaaatcagttgggatctgctgttaaaagagcaaatg |
207 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
1666768 |
accctgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatcaccaaatcagttgggatctgctgttaaaagagaaaatg |
1666669 |
T |
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| Q |
208 |
ggccagtgaattcaaaagcttatgctattgctgatgttctcaagacatcaatctaccaaatagtatctgcattccatgatgagatgttgtctgat |
302 |
Q |
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| T |
1666668 |
ggccagtgaattcaaaagcttatgctattgctgatgttctcaagacatcaatctaccaaatagtatctgtattccatgatgagatgttgtctgat |
1666574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 11 - 306
Target Start/End: Original strand, 1892449 - 1892740
Alignment:
| Q |
11 |
gtgttcgaggattgttgcctcactgactgcccgttcacggaaagaagataagtttggggttgctcagctttctgggagtaacactgctgtggtttcgacc |
110 |
Q |
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|||||| | |||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1892449 |
gtgttcaaagattgttgcctcactgactgcctgttcacgcaaagaa----agtttggggttgctcagctttctgggagtaacgctgctgtggtttcgacc |
1892544 |
T |
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| Q |
111 |
ttgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatacccaaatcagttgggatctgctgttaaaagagcaaatgggc |
210 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||| ||| ||||| || |
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| T |
1892545 |
ctgatatcatgccttcttgctgtcgagaatttcatgggaaagaaaacaaacctgcaatcaccaaatcagttggcatttgctgttaagagaaaaaatgagc |
1892644 |
T |
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| Q |
211 |
cagtgaattcaaaagcttatgctattgctgatgttctcaagacatcaatctaccaaatagtatctgcattccatgatgagatgttgtctgatacta |
306 |
Q |
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| T |
1892645 |
atgtgaattcagaagcttatgctattgctgatgttctcaagacatcaatctaccaaatagtatctgcatttcatgatcagatgttgtctggtacta |
1892740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 1664206 - 1664024
Alignment:
| Q |
8 |
ttggtgttcgaggattgttgcctcactgactgcccgttcacggaaagaagataagtttggggttgctcagctttctgggagtaacactgctgtggtttcg |
107 |
Q |
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||||||||| ||||||||||||||||||| || | |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1664206 |
ttggtgttcaaggattgttgcctcactgattgtctgttcacacgaagtagataagtttggggttgctcagctttctgggagtaacgctgctgtggtttcg |
1664107 |
T |
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| Q |
108 |
accttgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatacccaaatcagttgggatctgc |
190 |
Q |
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| T |
1664106 |
actctgatatcatgccttcttgctgtcgagaatatcatgggaaagaaaacaaacctgcaattaccaaatcagttgggatctgc |
1664024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 5998937 - 5999124
Alignment:
| Q |
8 |
ttggtgttcgaggattgttgcctcactgactgcccgttcacggaaagaagataagtttggggttgctcagctttctgggagtaacactgctgtggtttcg |
107 |
Q |
| |
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||||||||| ||||||||||||||||| |||||| |||| || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
5998937 |
ttggtgttcaaggattgttgcctcactaactgcctgttctcgcaaagaagataagtttggggctgctcagctttctgggagtaacgctgctgtggtttcg |
5999036 |
T |
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| Q |
108 |
accttgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatacccaaatca---gttgggatctgctg |
192 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
5999037 |
accctgatatcatgccttcttgctgtcgagaatttcatgggaaagaaaacaaacctgcaatcaccaaatcagctgttgggatctgctg |
5999124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 190 - 306
Target Start/End: Original strand, 5999176 - 5999292
Alignment:
| Q |
190 |
ctgttaaaagagcaaatgggccagtgaattcaaaagcttatgctattgctgatgttctcaagacatcaatctaccaaatagtatctgcattccatgatga |
289 |
Q |
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||||||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5999176 |
ctgttaaaagaaaaaacgggccagtaaattcaaaagcttatgctattgccgacgttctcaagacatcgatctaccaaatagtatctgcattccatgatga |
5999275 |
T |
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| Q |
290 |
gatgttgtctgatacta |
306 |
Q |
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||||||||||| ||||| |
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| T |
5999276 |
gatgttgtctggtacta |
5999292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 6647 - 6465
Alignment:
| Q |
8 |
ttggtgttcgaggattgttgcctcactgactgcccgttcacggaaagaagataagtttggggttgctcagctttctgggagtaacactgctgtggtttcg |
107 |
Q |
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||||||||| ||||||||||||||||||| || | |||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6647 |
ttggtgttcaaggattgttgcctcactgattgtctgttcacacgaagtagataagtttggggttgctcagctttctgggagtaacgctgctgtggtttcg |
6548 |
T |
|
| Q |
108 |
accttgatatcatgccttcttgctgttgagaatttcatgggaaagaaaacaaacctgcaatacccaaatcagttgggatctgc |
190 |
Q |
| |
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|| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6547 |
actctgatatcatgccttcttgctgtcgagaatatcatgggaaagaaaacaaacctgcaattaccaaatcagttgggatctgc |
6465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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